PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974700.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 758aa    MW: 85786 Da    PI: 6.5224
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.12.8e-1163847561374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a++++d ++a++lL++++++asp gd  qRla++f+ +L+arla+++s++y+al +++ts    ++ ++a++l+   sP+ k+s+
  XP_024974700.1 384 LRTLLITCAQAIAADDRRNANELLKKIRQHASPFGDGSQRLAHCFADGLEARLAGTGSQIYRALVSKKTS---ATDYIKAYHLYIASSPFRKISN 475
                     6789***************************************************************999...9********************* PP

            GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++ N++I + +  e  +r+HiiDf+i +G+QWp+++q + ++++gpp++R+Tg++ p++g   +e++eetg rL+++A++++vpfe+n+ +akr+
  XP_024974700.1 476 FASNRTIRDMAVAEnaTRIHIIDFGIHYGFQWPTFIQRILEKEGGPPRIRLTGIEFPQPGfrPAERIEETGLRLKEYASHFNVPFEYNP-IAKRW 569
                     *******9975444359******************************************9*****************************.7**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ed+++e+L++++gE l+Vn++++ ++llde+v ++s+r+ vL+l+k++sP+++++   + ++n++ F++rf eal ++salfd+le+++pre +e
  XP_024974700.1 570 EDVSVEDLKIDEGEFLVVNCMYRSKNLLDETVGVDSARNVVLDLIKKISPDIFIHGILNGSYNAPFFVTRFREALFHFSALFDMLETNVPRERSE 664
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+ +Erel+gre+ nv+aceg+er+er et+++W++r  +aG+ + p+s ++ k a+  +  +++d ++++ ++++l+lgWk+r ++++S+W+
  XP_024974700.1 665 RMLLERELFGREALNVIACEGSERVERPETYKQWHARNLRAGLVSFPFSREIIKMAREKVGLYHKD-FMIDVDNQWLLLGWKGRIIYAISCWK 756
                     ****************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    
MDPRIRRFAS SANGNGIKFG NQSITAKALD NPPRFENACS VYDPVNGNLD SVSVYDHNFR  60
GIQFDRNFRG IQFDPPTSSS LVVSADELHE DCDLSDAILG YISQVLMEED MEDKSCMLYE  120
SLDLQAAEKS FYDVLGKKYP PSPSYDEGLL SVDRYIESPS DYSSLDQNTY VGEFTNGSGY  180
LHHESNLQSL GANDVSCRSV SSSNSGNNVI DGFIDSPART FQAPEICDEN QMMLKFNKGV  240
EEANKFLPSD NKLLASFNGG ESWPKVENSK GGELMVMVDG RNLQTWTRVR KSPCGEDDIG  300
VEERSIKQAA IYQDSTLRSK EIDLILLCSQ GQGDVALRSL RYTLQKETSK DKLKDKEPKC  360
LTKGKGKGKG RSRKQKNTKE VIDLRTLLIT CAQAIAADDR RNANELLKKI RQHASPFGDG  420
SQRLAHCFAD GLEARLAGTG SQIYRALVSK KTSATDYIKA YHLYIASSPF RKISNFASNR  480
TIRDMAVAEN ATRIHIIDFG IHYGFQWPTF IQRILEKEGG PPRIRLTGIE FPQPGFRPAE  540
RIEETGLRLK EYASHFNVPF EYNPIAKRWE DVSVEDLKID EGEFLVVNCM YRSKNLLDET  600
VGVDSARNVV LDLIKKISPD IFIHGILNGS YNAPFFVTRF REALFHFSAL FDMLETNVPR  660
ERSERMLLER ELFGREALNV IACEGSERVE RPETYKQWHA RNLRAGLVSF PFSREIIKMA  720
REKVGLYHKD FMIDVDNQWL LLGWKGRIIY AISCWKVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein