PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974646.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 305aa MW: 33881.8 Da PI: 7.3455

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	6e-16	34	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k++ ++ + + +st+p++++l+ XP_024974646.1 34 CWSEDATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKVEKARVSESNGQITSTWPFYSRLD 124 7***********************************99888888999********************9999999******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MGDDLALINS PSPATVAGAT QTPSSRPLPF REDCWSEDAT STLVDAWGRR YLELNRGNLR 60 QKDWQEVADA VNARHGHTKK TRRTDVQCKN RIDTLKKKYK VEKARVSESN GQITSTWPFY 120 SRLDTLIGSA ATAKKSSSSS PPTAVPLPYR KPPSTVLSSQ FQQPVVLPQK RPLPVAAAVD 180 DSYFRRNYSA VAAAAAAAEE DGSEDDESLG TSEDDGAAGG EGVRKEGGGD SDCMKRLARA 240 IERFGEIYER VEGEKQKQMI ELEKQRMQFT KDLEVQRMQL FMDTQVQLEK IKQAKRTVSD 300 DDVYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-44	Trihelix family protein