PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024974645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 305aa MW: 33881.8 Da PI: 7.3455 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.4 | 6e-16 | 34 | 124 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k++ ++ + + +st+p++++l+ XP_024974645.1 34 CWSEDATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKVEKARVSESNGQITSTWPFYSRLD 124 7*************************************99888888999************************9999999********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MGDDLALINS PSPATVAGAT QTPSSRPLPF REDCWSEDAT STLVDAWGRR YLELNRGNLR 60 QKDWQEVADA VNARHGHTKK TRRTDVQCKN RIDTLKKKYK VEKARVSESN GQITSTWPFY 120 SRLDTLIGSA ATAKKSSSSS PPTAVPLPYR KPPSTVLSSQ FQQPVVLPQK RPLPVAAAVD 180 DSYFRRNYSA VAAAAAAAEE DGSEDDESLG TSEDDGAAGG EGVRKEGGGD SDCMKRLARA 240 IERFGEIYER VEGEKQKQMI ELEKQRMQFT KDLEVQRMQL FMDTQVQLEK IKQAKRTVSD 300 DDVYS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 4e-44 | Trihelix family protein |