PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024974612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 16637.8 Da PI: 8.4809 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.2 | 5.9e-43 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++Cv++pyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ XP_024974612.1 10 PCAACKFLRRKCIQGCVFSPYFPPEDPTKFANVHKIFGASNVSKLLNEIAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_024974612.1 105 ATNA 108 9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MASSSHPSAP CAACKFLRRK CIQGCVFSPY FPPEDPTKFA NVHKIFGASN VSKLLNEIAP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL IRFSSNQNTL 120 MTPSSSSGSS LQNPHVLPPH YGNYSWNYNP N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 7e-63 | LBD family protein |