PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974511.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 262aa MW: 30199.2 Da PI: 4.3396

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l +++++G +W + ++ g+ R++k+c++rw +yl XP_024974511.1 14 KGAWNEEEDDKLRAYIQRYGHWNWGLLPQFAGLSRSGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	58.6	1.4e-18	68	112	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eEd+l+vd++++lG++ W+t a++++ gR+++++k+rw+++l XP_024974511.1 68 GNFTKEEDDLIVDLHNKLGNK-WSTMAAKLP-GRSDNEIKNRWNTHL 112 89*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MAKSLSFDKN GVKKGAWNEE EDDKLRAYIQ RYGHWNWGLL PQFAGLSRSG KSCRLRWMNY 60 LRPDLKHGNF TKEEDDLIVD LHNKLGNKWS TMAAKLPGRS DNEIKNRWNT HLKKRAHEDE 120 MIVLENEHEG SIELDQVEQK ENPNLEVLHE GEIFLEGYLE SPSCSSGTEL SSCWMSTSDY 180 TVSSDVALQT SDYESTGDFW SEPFLPDITS SIDNMLSPSD LIDGYVSHDQ SSCQDVTMSD 240 EFSWSTFDSY FQYNNELVDW SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-51	MYB family protein