PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974470.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30945.4 Da    PI: 4.4336
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1951104356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe+++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_024974470.1  51 KKRRLSVDQVKALEKNFEMENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 104
                     566899***********************************************9 PP
2HD-ZIP_I/II130.85.2e-4250142193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe+e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++d+lk++ e+L++++e+L ++++e
  XP_024974470.1  50 EKKRRLSVDQVKALEKNFEMENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDSLKNNYESLKHDNESLLKQIRE 142
                     69**************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MAGLMPMCST IVEEGGNSPV GYTREFQSML MEGLDEDGGG EESAGGQISE KKRRLSVDQV  60
KALEKNFEME NKLEPERKVK LAQELGLQPR QVAVWFQNRR ARWKTKQLER DYGVLKANFD  120
SLKNNYESLK HDNESLLKQI RELKSKLYGE DEETHVPVKE ETGDKPKSPE MMYENMTTYF  180
KDGSSDSDSS AILNEDNNSS NMAAAIVMNC QQLPESKAIM GDAQKAYQPQ FVKIEEHNFF  240
SGDESCNFFS DDQAPTLQWY CQDQWNLTED N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15180KKRRLSVDQVKALEKNFEMENKLEPERKVK
299107RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-72HD-ZIP family protein