PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974405.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 501aa MW: 54960.4 Da PI: 6.8343

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.5e-17	170	219	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_024974405.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219 78*****************......55**********************998 PP
2	AP2	42.9	1.2e-13	262	312	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_024974405.1 262 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 312 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MWDLNGFPDR RKAPEESEGC SSPVEGEEDD DNNNKNNKGK RVGSISNSSS SVVVMEEDDA 60 SDEDDSERMT SRKRLFGFSM DGDPPPVTHQ FFPIDDPQVG PTTSLAVGIS PATAFPAAHW 120 VGVQFCHQSP GPISGATAAS SVGGFLGKAA VPEVPQPLKK SRRGPRSRSS QYRGVTFYRR 180 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGM EADINFSLDD YEDDLKQMSN 240 LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA 300 RAYDKAAIKC NGKAAVTNFD SRIYENELNL TECSSNSNND NNVSSGHNLD LSLGGGSTSN 360 MANSGGENGH FVRAHRSDSI QLGFRPTGQN ERKTLQLLSH TDPELFTNQN EISGYKHLMR 420 PVDSSMHHMF NPPVFNSLSR HQMQFSSSRS VEGGGGNDLS VASSDNNNSN NNVNADGPSL 480 HQIYAKSAAA SSGFPQQRFN I

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MWDLNGFPDR RKAPEESEGC SSPVEGEEDD DNNNKNNKGK RVGSISNSSS SVVVMEEDDA  60
SDEDDSERMT SRKRLFGFSM DGDPPPVTHQ FFPIDDPQVG PTTSLAVGIS PATAFPAAHW  120
VGVQFCHQSP GPISGATAAS SVGGFLGKAA VPEVPQPLKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGM EADINFSLDD YEDDLKQMSN  240
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA  300
RAYDKAAIKC NGKAAVTNFD SRIYENELNL TECSSNSNND NNVSSGHNLD LSLGGGSTSN  360
MANSGGENGH FVRAHRSDSI QLGFRPTGQN ERKTLQLLSH TDPELFTNQN EISGYKHLMR  420
PVDSSMHHMF NPPVFNSLSR HQMQFSSSRS VEGGGGNDLS VASSDNNNSN NNVNADGPSL  480
HQIYAKSAAA SSGFPQQRFN I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-116	AP2 family protein