PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974172.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 238aa MW: 27459.2 Da PI: 6.0545

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.5e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++++++G g W++++ + g++R++k+c++rw++yl XP_024974172.1 13 KGAWTAEEDMLLKNCIEKYGEGKWHLVPLKAGLRRCRKSCRLRWLNYL 60 79********************************************97 PP
2	Myb_DNA-binding	47.2	5.2e-15	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_024974172.1 66 RGDFEEDEVDLILRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 111 78999***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MKHTCNTSLA LKKGAWTAEE DMLLKNCIEK YGEGKWHLVP LKAGLRRCRK SCRLRWLNYL 60 RPNIKRGDFE EDEVDLILRL HKLLGNRWSL IAGRIPGRTA NDVKNYWNTH LRSRAKQKNI 120 EPQYAKLSED HTMLTIIKPQ PQTFSKTLNW FKDDGVDNND NMSPGLIPSP LIPDDKINEF 180 LKELFDEGEK AIDGEIGWSF DGSPTTGEAL NIVEQEDNQN NLFDFSTDEV MWNLLASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	7e-62	MYB family protein