PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974141.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 343aa MW: 38934.5 Da PI: 4.5009

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	15	61	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+eEd++l++ + G +W+++++ g+ R++k+c++rw +yl XP_024974141.1 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 89***************************99**********97 PP
2	Myb_DNA-binding	51.1	3.2e-16	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ XP_024974141.1 71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 6779************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRQPCCDKV GLKQGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPLTHKPLP LPTSSTEQQS PLLPSALVNE PSQTRENSPS KPMEYQNSES IEVVNETISI 180 QSSSITEVAK DEQEDGEEST MIAKESQVGD FCTDEVPLIE PHEIMLPNDV NILPPLSSSS 240 SSSSTSSNYN ITICNQNYAH EEQHQFLPSF DWCSSSFDST TYSNFEAGFW DDDDEFINSL 300 SMLINDCDEI DTTTRNDATF TQDLTQCSRM LIDDDTWKFE QLL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRQPCCDKV GLKQGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHKPLP LPTSSTEQQS PLLPSALVNE PSQTRENSPS KPMEYQNSES IEVVNETISI  180
QSSSITEVAK DEQEDGEEST MIAKESQVGD FCTDEVPLIE PHEIMLPNDV NILPPLSSSS  240
SSSSTSSNYN ITICNQNYAH EEQHQFLPSF DWCSSSFDST TYSNFEAGFW DDDDEFINSL  300
SMLINDCDEI DTTTRNDATF TQDLTQCSRM LIDDDTWKFE QLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	2e-96	MYB family protein