PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974114.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 1433aa MW: 157530 Da PI: 6.2319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.7e-07	1411	1433	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+ f+++G Ck G++Ck+ H+ XP_024974114.1 1411 QRVCK-FYESGRCKKGASCKYLHP 1433 689.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1433 aa Download sequence
MMEGQNLGGE GQSVDKSQPI GDDSKLVRGA MDVVQAVADG GGKVELGSGG GGGGGGGEVV 60 KKKRGRPPKA QAKHPPAKKN KEEEEEEDVC FICFDGGSLV LCDRRGCPKA YHPTCIKRDE 120 AFFQSAARWN CGWHICSLCQ KAAHHMCYTC TFSLCKACIK KSDYVGVRND KGFCTICMKT 180 IMLIENNGQG EDGKVEADFD DKLSWEYLFK VYWVFLKGNL SLTVDELIAS KKRSNGASTV 240 SSALPSTGVH NRANDLRSIT SAASFGNAEA NESKRRKIDE QVNILPKETV NTEKVGNDDS 300 LTMVECKEWA TKELLDFIAH MKNGDTSVVS QLDVQALMIE YIKINNLHDP RKKNQIICDV 360 RLKNIFGKPR VGHNQMRKLL ERHFLIKEDS QKSTVNSNAV QDDANWNHAN MLMVSKDRKP 420 RNRSKGEGRV VQNRLDDFAA VDVHNMNLLY LRRDLMEKLL EDTENFHDKV VGSLVRIRIS 480 GSDLKHDMYR LVQVVGTSKV DVPYKVDSKL ADIMLEVLNL DKKETISIDT VSDQEFTEEE 540 CRRLQQSIQC GLVKHFIVGE IQEKAVALQP VKLNDWTEKE ILRLNHARDA ASEKGHKKSY 600 RECVEKLQLL NSPDERERRL KEIPVIRSDP KMNPHYESDD TEEYFNKEHG DHMESKYSRV 660 SSKNSRSPKK RAARSNATNN KSRKNERSKS KNVEDGSTKD LVPSTLAKSQ NEPDCNGSTI 720 TKSDHQATFS STVSNSAPET IASSHSTEKT SSPNDLLWHY LDPYGKVQGP FSILQLQRWS 780 TTGYFPTDMM VWASHEDKSL LLTDVLKEQL HNHDAHQSEN IITSNKTGNQ TEGLNVCSAI 840 PSAAVAVTPY APDPVNHEKL SDSHGSSGQS FGQNWSANNN LNGNPTSVAS LTLSNESTGQ 900 LNDANMPMGT VRNEADIKHV STVCKDADAA LFDLPGPTPK KAIVEDEKMQ SLPDSKLLIQ 960 DSGNPPSWSS ASSLVVGGAK LPVSADGWGG CSSTPVKREE WDSGLVSVSS FKPLEVAGDH 1020 VATPTSNIDQ NIQSSQPCND LPTWHGMGEM IEFSTLAEES VSDLLAEVDA MESQYGLPSP 1080 TSRRNSFVDD LFNGSFDEFS PTPDQGTRSD GFSSSGDIQL PCQSTTTTTT DEHLVGGSSR 1140 GNNINAFDLM KTSNGLQLHS FISHEIDGQA SIGIPQRTNS ENMVFEWPEM ERDPQNMIDI 1200 NRSAKAEGEE GEMETKTSDV VKVKVENGNY IQPVAPLDTF QNRGGSSHAG ADGGGIILQA 1260 ESTGDLKSTA EPMRAPKTAG ASNHMRVGNI LDKEEDDRFF QPPPPPPAPP LTLGLDPFDL 1320 RGWGSEGKAN DSGRSGNIGW EANENQNHRR YGSGERYNSS NSQQHPVEEG GCSRSSRSGW 1380 NKQPSFGSGN GGGAGGYSRQ SPPAKGQQQQ QRVCKFYESG RCKKGASCKY LHP

Sequence ? help Back to Top

Protein Sequence Length: 1433 aa Download sequence

MMEGQNLGGE GQSVDKSQPI GDDSKLVRGA MDVVQAVADG GGKVELGSGG GGGGGGGEVV  60
KKKRGRPPKA QAKHPPAKKN KEEEEEEDVC FICFDGGSLV LCDRRGCPKA YHPTCIKRDE  120
AFFQSAARWN CGWHICSLCQ KAAHHMCYTC TFSLCKACIK KSDYVGVRND KGFCTICMKT  180
IMLIENNGQG EDGKVEADFD DKLSWEYLFK VYWVFLKGNL SLTVDELIAS KKRSNGASTV  240
SSALPSTGVH NRANDLRSIT SAASFGNAEA NESKRRKIDE QVNILPKETV NTEKVGNDDS  300
LTMVECKEWA TKELLDFIAH MKNGDTSVVS QLDVQALMIE YIKINNLHDP RKKNQIICDV  360
RLKNIFGKPR VGHNQMRKLL ERHFLIKEDS QKSTVNSNAV QDDANWNHAN MLMVSKDRKP  420
RNRSKGEGRV VQNRLDDFAA VDVHNMNLLY LRRDLMEKLL EDTENFHDKV VGSLVRIRIS  480
GSDLKHDMYR LVQVVGTSKV DVPYKVDSKL ADIMLEVLNL DKKETISIDT VSDQEFTEEE  540
CRRLQQSIQC GLVKHFIVGE IQEKAVALQP VKLNDWTEKE ILRLNHARDA ASEKGHKKSY  600
RECVEKLQLL NSPDERERRL KEIPVIRSDP KMNPHYESDD TEEYFNKEHG DHMESKYSRV  660
SSKNSRSPKK RAARSNATNN KSRKNERSKS KNVEDGSTKD LVPSTLAKSQ NEPDCNGSTI  720
TKSDHQATFS STVSNSAPET IASSHSTEKT SSPNDLLWHY LDPYGKVQGP FSILQLQRWS  780
TTGYFPTDMM VWASHEDKSL LLTDVLKEQL HNHDAHQSEN IITSNKTGNQ TEGLNVCSAI  840
PSAAVAVTPY APDPVNHEKL SDSHGSSGQS FGQNWSANNN LNGNPTSVAS LTLSNESTGQ  900
LNDANMPMGT VRNEADIKHV STVCKDADAA LFDLPGPTPK KAIVEDEKMQ SLPDSKLLIQ  960
DSGNPPSWSS ASSLVVGGAK LPVSADGWGG CSSTPVKREE WDSGLVSVSS FKPLEVAGDH  1020
VATPTSNIDQ NIQSSQPCND LPTWHGMGEM IEFSTLAEES VSDLLAEVDA MESQYGLPSP  1080
TSRRNSFVDD LFNGSFDEFS PTPDQGTRSD GFSSSGDIQL PCQSTTTTTT DEHLVGGSSR  1140
GNNINAFDLM KTSNGLQLHS FISHEIDGQA SIGIPQRTNS ENMVFEWPEM ERDPQNMIDI  1200
NRSAKAEGEE GEMETKTSDV VKVKVENGNY IQPVAPLDTF QNRGGSSHAG ADGGGIILQA  1260
ESTGDLKSTA EPMRAPKTAG ASNHMRVGNI LDKEEDDRFF QPPPPPPAPP LTLGLDPFDL  1320
RGWGSEGKAN DSGRSGNIGW EANENQNHRR YGSGERYNSS NSQQHPVEEG GCSRSSRSGW  1380
NKQPSFGSGN GGGAGGYSRQ SPPAKGQQQQ QRVCKFYESG RCKKGASCKY LHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein