PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024973971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33000.9 Da PI: 9.0687 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36 | 1.6e-11 | 28 | 74 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT eE +++ da +++ ++ +W+ +a+ ++ g+t +++++++k+ XP_024973971.1 28 EWTLEENKRFEDALALFDKEtpdRWHNVAQLIP-GKTVVDVINHYRKL 74 7*****************99*************.************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.2e-14 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky XP_024973971.1 132 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 176 7*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence |
MNRATEIPSP SSYFRGSTLF FEGTKETEWT LEENKRFEDA LALFDKETPD RWHNVAQLIP 60 GKTVVDVINH YRKLEEDISE IEAGVCVVPG YSSSDPVTLE WVANNHPQFY SPGGKRSASN 120 RLPDQEKKKG IPWTEEEHRQ FLLGLKKYGK GDWRNISRNF VTSRTPTQVA SHAQKYFIRQ 180 LSGGKDKRRS SIHDITTVHL NDTRTKTQLP ENDTCPKPSE CTTLVTQPPK PQHHHSNMSK 240 ALYKWSLPNQ QVATNMAFNL PNSSLRMAPL HGSSSYGSQY GHLGTVFQGN C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-95 | MYB family protein |