PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 360aa MW: 40496.4 Da PI: 8.8865 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 220 | 274 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k XP_024973930.1 220 RKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 274 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.5 | 5.8e-41 | 220 | 310 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk XP_024973930.1 220 RKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELR-ALK 310 69*************************************************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence |
MELALSLGDT PKPFSLLDHH DRSQQQKMKD LGFCMGLGTR NLEDLHFKNM RREKDDDGHR 60 KTDERISSSS SSDPSPPPPP PLQLDLLPFS PVLRSAPPPP SHRCFPWLSK NLRADPGSQT 120 KPVKALDVKP LAAVSDQDNG EERVADESSP NNSNSGTSSF QMDFSSIFKS SNSGRSFPSR 180 KRDLELATVN LELIDVSERD QRASSRGGGM SDEDENGLTR KKLRLTKEQS AFLEDSFKEH 240 STLNPKQKQA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTDENRRLQ 300 KELQELRALK TSQPFYMQMP ATTLTMCPSC ERVATTTTAA PTTATTSRSQ QPATTGSHRH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 225 | TRKKLRL |
2 | 269 | 277 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 7e-83 | HD-ZIP family protein |