PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 360aa    MW: 40496.4 Da    PI: 8.8865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18220274256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_024973930.1 220 RKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 274
                     788899***********************************************98 PP

2HD-ZIP_I/II127.55.8e-41220310192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk
  XP_024973930.1 220 RKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELR-ALK 310
                     69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MELALSLGDT PKPFSLLDHH DRSQQQKMKD LGFCMGLGTR NLEDLHFKNM RREKDDDGHR  60
KTDERISSSS SSDPSPPPPP PLQLDLLPFS PVLRSAPPPP SHRCFPWLSK NLRADPGSQT  120
KPVKALDVKP LAAVSDQDNG EERVADESSP NNSNSGTSSF QMDFSSIFKS SNSGRSFPSR  180
KRDLELATVN LELIDVSERD QRASSRGGGM SDEDENGLTR KKLRLTKEQS AFLEDSFKEH  240
STLNPKQKQA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTDENRRLQ  300
KELQELRALK TSQPFYMQMP ATTLTMCPSC ERVATTTTAA PTTATTSRSQ QPATTGSHRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225TRKKLRL
2269277RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-83HD-ZIP family protein