PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 25881.3 Da PI: 9.2129 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 45 | 87 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT +Ed +l++ + +Gg++Wk I+ ++ gRt+++ck rw + XP_024973914.1 45 HWTRWEDFKLIKHIVAHGGRNWKIISDQLP-GRTPESCKVRWSS 87 7*****************************.***********76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MASSSSQSVH AGVSDDGHQN HQMETRRIVE VPNRVVSRPN MAKRHWTRWE DFKLIKHIVA 60 HGGRNWKIIS DQLPGRTPES CKVRWSSTLN PLLKKPPLRR QEEPISEEEL GRTDVYVKIF 120 YHALMAKKHA SMNPTSSPMN GAHSVVSSVS PSGKTAHSSG IDLNGPSDVY EQRTGMGNNC 180 GICKKTMENE ESFMASMHLP STSLNPITLA TNNDWQPTES PPKLIDFMGV GSV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 9e-11 | MYB family protein |