PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973890.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 291aa    MW: 32212 Da    PI: 8.2854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.34.2e-16144199256
                     T--SS--HHHHHHHHHHHHHSSS--H.HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsa.eereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee+Fe ++ ++  ++++eLA++l+L  rqV vWFqNrRa+ k
  XP_024973890.1 144 RKKLRLTKPQSALLEEAFELHSSLNPqKQKQELARELKLRPRQVEVWFQNRRARTK 199
                     678899**************99998625899***********************98 PP
2HD-ZIP_I/II1123.8e-36144234191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k q++lLEe Fe ++ L+p ++K+elareL+l+prqv+vWFqnrRARtk+kq+E dye+Lk+++++l++en+rL+ke +eL+ +l
  XP_024973890.1 144 RKKLRLTKPQSALLEEAFELHSSLNPqKQKQELARELKLRPRQVEVWFQNRRARTKLKQTELDYEHLKKCCETLRDENRRLHKELQELK-AL 234
                     69***********************94579**********************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MGFDRVCDTG LVLGLSLNSS PSMFKPNTMG SGSGSGSTKE SCVTENMPSF EPSLTLGLSG  60
DHRDPNTSWK RLVVGGGHGG VYRQDSTVIS GGGSSFSSLS VKREREVGSE ESERVSNDNN  120
YSSRVMSTTS VDDVEDDDGT VNGRKKLRLT KPQSALLEEA FELHSSLNPQ KQKQELAREL  180
KLRPRQVEVW FQNRRARTKL KQTELDYEHL KKCCETLRDE NRRLHKELQE LKALKSSQPF  240
YMQLPAATLT MCPSCERVGD TNSATTTSKN PFTMAAKPHF FNSFTNPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-77HD-ZIP family protein