PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973882.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 355aa MW: 40016.3 Da PI: 7.8928

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	159	205	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++v+q+G W+ Ia++m gR +kqc++rw+++l XP_024973882.1 159 KGQWTDEEDRKLIRLVNQFGVAKWAVIAEKMT-GRAGKQCRERWRNHL 205 799**************************9.***********97 PP
2	Myb_DNA-binding	45.7	1.5e-14	211	253	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE l++a+++ G++ W+ Ia+ ++ gRt++ +k+ w+ XP_024973882.1 211 KDTWSEEEVRMLIEAHQRIGNK-WAEIAKLIP-GRTENAIKNQWN 253 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MEGGDHGVYG GGHGVAGLAN YLNYQNYSSW FKRAPPPLTA IERFLWGRNR SDQTQNPLSQ 60 HQNQQINEAF ISSNGGFQFS GSNGAINNES QICFPPCLSM AKSSAAIEDV FTKDVGECLN 120 WDELMNYPNY DPYRDSNPEK ISRSTKKSKG GETSKVLIKG QWTDEEDRKL IRLVNQFGVA 180 KWAVIAEKMT GRAGKQCRER WRNHLRPDIK KDTWSEEEVR MLIEAHQRIG NKWAEIAKLI 240 PGRTENAIKN QWNATKRRQN SSRKFKKTDT NNRKSQSSLL QDYIRSQTSD QNLASSSCST 300 ATATATTGET LESSAIIFAD QLTHSDSIDS DPSLDITQSY DDELNFMQTF FPTAS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MEGGDHGVYG GGHGVAGLAN YLNYQNYSSW FKRAPPPLTA IERFLWGRNR SDQTQNPLSQ  60
HQNQQINEAF ISSNGGFQFS GSNGAINNES QICFPPCLSM AKSSAAIEDV FTKDVGECLN  120
WDELMNYPNY DPYRDSNPEK ISRSTKKSKG GETSKVLIKG QWTDEEDRKL IRLVNQFGVA  180
KWAVIAEKMT GRAGKQCRER WRNHLRPDIK KDTWSEEEVR MLIEAHQRIG NKWAEIAKLI  240
PGRTENAIKN QWNATKRRQN SSRKFKKTDT NNRKSQSSLL QDYIRSQTSD QNLASSSCST  300
ATATATTGET LESSAIIFAD QLTHSDSIDS DPSLDITQSY DDELNFMQTF FPTAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	1e-65	MYB family protein