PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973804.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 621aa MW: 69314.8 Da PI: 4.9672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.6e-13	456	502	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++ ++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_024973804.1 456 NHVLAERRRREKLSERFIILRSLVPLV-----TKMDKASILGDTIEYVKQLR 502 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MMAAAGPPYD GLKRMLQSAV QSVQWTYTIF WKFCPQGRVL VWGDGYYNGA IKTRKTVQSV 60 EVSTEEAALS RSEQLRELYD SLETGDHQVT DNQQQPPIRR PSVALSPEDL TESEWFYLMC 120 VSFSFPPGVG LVGEAYAKQQ QLWLTGANEV DSKVFTRAIL AKSAHIQTVV CIPLLNGVVE 180 LGTTEKVEEA VEFVRHVKTF FTVDNDNHRI LPPPPKPALS AHSSNTALST HQIPATINLP 240 ENGYSMDEDD VENDDEDEEE DDDEEEENGS DFEAETGHLS EGGHDEDKSG MAAAVEDVNE 300 LLEVDMSEDI RFGSPNDGSS HFDSGFQLLP RSQADSCRAE SPPRWSDSLE LHQLHASAEP 360 EDDHYSRTVS TILHNQLRRW SDDSQSAASG RNSLLYTTQS SFTMWTSTHH PKTTPSNSQW 420 LLKYMLYTVP FLHTKSKSLD SVPKTMTSHE ELMSANHVLA ERRRREKLSE RFIILRSLVP 480 LVTKMDKASI LGDTIEYVKQ LRKKIQDLEA LDHSSSKMRK IRVAEGSGGR TAVAVQVEVS 540 IIESDALVEI QCLHREGLLL DVMKKLRELG VEITTVQSCV NGGMCMAEMR AKVKAKGNNG 600 KKISIMQVKK AIGQIVSPSL Y

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MMAAAGPPYD GLKRMLQSAV QSVQWTYTIF WKFCPQGRVL VWGDGYYNGA IKTRKTVQSV  60
EVSTEEAALS RSEQLRELYD SLETGDHQVT DNQQQPPIRR PSVALSPEDL TESEWFYLMC  120
VSFSFPPGVG LVGEAYAKQQ QLWLTGANEV DSKVFTRAIL AKSAHIQTVV CIPLLNGVVE  180
LGTTEKVEEA VEFVRHVKTF FTVDNDNHRI LPPPPKPALS AHSSNTALST HQIPATINLP  240
ENGYSMDEDD VENDDEDEEE DDDEEEENGS DFEAETGHLS EGGHDEDKSG MAAAVEDVNE  300
LLEVDMSEDI RFGSPNDGSS HFDSGFQLLP RSQADSCRAE SPPRWSDSLE LHQLHASAEP  360
EDDHYSRTVS TILHNQLRRW SDDSQSAASG RNSLLYTTQS SFTMWTSTHH PKTTPSNSQW  420
LLKYMLYTVP FLHTKSKSLD SVPKTMTSHE ELMSANHVLA ERRRREKLSE RFIILRSLVP  480
LVTKMDKASI LGDTIEYVKQ LRKKIQDLEA LDHSSSKMRK IRVAEGSGGR TAVAVQVEVS  540
IIESDALVEI QCLHREGLLL DVMKKLRELG VEITTVQSCV NGGMCMAEMR AKVKAKGNNG  600
KKISIMQVKK AIGQIVSPSL Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	461	466	ERRRRE
2	462	467	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-89	bHLH family protein