PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973729.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 386aa MW: 42319.8 Da PI: 6.2455

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++ G g+W++ + + g+ R++k+c++rw +yl XP_024973729.1 14 KGPWTPEEDQKLLAYIEENGHGSWRALPTKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_024973729.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE ENGHGSWRAL PTKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVSHKPKN DTLLSSDGQS KSVANLSHMA QWESARLEAE ARLVKQSKLQ CISPVAKQPG 180 SVESSSTSFK LLAPASGPPT KCLDVLKAWN RVCGNKHNDV GGGNGGGDLE SPTSTISTTG 240 AGESSTNFFE FVGGNSSGSC DDGTTGEECE DEWEYKDENQ LENSVPITSA FNGLNMPSID 300 NAWTIDSSKS DNSNNNNNEH VPGGNFLESF TDLLLSSSST SNRGSDLNTS LEPNGVTNSY 360 HEDNNKNYWN NILNLVNSSL QDPPLF

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE ENGHGSWRAL PTKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVSHKPKN DTLLSSDGQS KSVANLSHMA QWESARLEAE ARLVKQSKLQ CISPVAKQPG  180
SVESSSTSFK LLAPASGPPT KCLDVLKAWN RVCGNKHNDV GGGNGGGDLE SPTSTISTTG  240
AGESSTNFFE FVGGNSSGSC DDGTTGEECE DEWEYKDENQ LENSVPITSA FNGLNMPSID  300
NAWTIDSSKS DNSNNNNNEH VPGGNFLESF TDLLLSSSST SNRGSDLNTS LEPNGVTNSY  360
HEDNNKNYWN NILNLVNSSL QDPPLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-110	MYB family protein