PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973657.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28863 Da PI: 10.1346 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ XP_024973657.1 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 100.4 | 2.5e-33 | 82 | 173 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + e++++ s++ e++kL+++ie L++++Rh++GedLe+L+l+eLq++eqqLe++lk+iR++Kn++++e+i+el kke++lqe+n++L+kkl+ XP_024973657.1 82 APETETQGSWTLESSKLRAKIEVLEKNIRHYVGEDLEPLNLRELQSVEQQLETALKRIRTRKNQVMHESISELHKKERALQEQNNSLSKKLK 173 456777899*********************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATH 60 SSMEAILERY ERYSYAEKLL TAPETETQGS WTLESSKLRA KIEVLEKNIR HYVGEDLEPL 120 NLRELQSVEQ QLETALKRIR TRKNQVMHES ISELHKKERA LQEQNNSLSK KLKANEKNGD 180 QRNAGFQLPQ SQPPPPPPPP PPPPPPPPHH LAPLTFGSGS FQGAAVMRDD ESIQAHTNMS 240 ASMMPPWLLR HINQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-90 | MIKC_MADS family protein |