PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973600.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GeBP

Protein Properties

Length: 409aa MW: 45167.6 Da PI: 4.4306

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118	5.1e-37	115	214	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrlw++eDei lLqG++d+++++g+ + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke +f+++hdq +f+ls XP_024973600.1 115 LFQRLWNDEDEIELLQGFLDYTTQRGTnnssHHHHDTAAFYDQIKGKLQLDFNKNQLVEKLRRLKKKYRNVLSKISSGKEYVFKSPHDQATFDLS 209 79***********************864333459******************************************************* PP DUF573 93 kkiWg 97 kiW XP_024973600.1 210 CKIWS 214 **6 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGSDEEDHPT AVYGEEDIDE EDDEESEEEE HTLQNRHVDE DDVDLIDVME DDEEEDDSMS 60 SAAGEVTIAV AGIPNVTTTV AATPTTATTT TTSLVRSDAI VEVKKPVALD DSRRLFQRLW 120 NDEDEIELLQ GFLDYTTQRG TNNSSHHHHD TAAFYDQIKG KLQLDFNKNQ LVEKLRRLKK 180 KYRNVLSKIS SGKEYVFKSP HDQATFDLSC KIWSGIAATT VSTPATADGG GIDDDEPHNP 240 NPNPNFTFNL NEHNGNDIAD PNSSEKKVPR PRKRSRSSAV KIEENFNQQH QFSQSMGAGA 300 GAGAVAGASN PAIPNVVEET VKSCLLPLFK ELVNNSPNGP CGNSRGLGLG LGGMNMNPFG 360 GSMNFSIGDM TDDKWRKQHI LELEVYSKRL ELMQDQIKSR LEELRSMGS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGSDEEDHPT AVYGEEDIDE EDDEESEEEE HTLQNRHVDE DDVDLIDVME DDEEEDDSMS  60
SAAGEVTIAV AGIPNVTTTV AATPTTATTT TTSLVRSDAI VEVKKPVALD DSRRLFQRLW  120
NDEDEIELLQ GFLDYTTQRG TNNSSHHHHD TAAFYDQIKG KLQLDFNKNQ LVEKLRRLKK  180
KYRNVLSKIS SGKEYVFKSP HDQATFDLSC KIWSGIAATT VSTPATADGG GIDDDEPHNP  240
NPNPNFTFNL NEHNGNDIAD PNSSEKKVPR PRKRSRSSAV KIEENFNQQH QFSQSMGAGA  300
GAGAVAGASN PAIPNVVEET VKSCLLPLFK ELVNNSPNGP CGNSRGLGLG LGGMNMNPFG  360
GSMNFSIGDM TDDKWRKQHI LELEVYSKRL ELMQDQIKSR LEELRSMGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	8e-52	GeBP family protein