PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973592.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 438aa    MW: 49981.4 Da    PI: 8.4484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.4e-1384172399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     k +++++v    ++ +p  f  +  ++k +++t+++ede+g ++ +++i rk++    l++GWk+F++ ++L egD++vF+l++  +f  +v ++
  XP_024973592.1  84 KLMVKAHVDIGYWMGFPQLFG-KLFLPK-TDTTMVIEDENGDVYHIRYIARKNG----LSAGWKKFADWHNLLEGDILVFHLVEPCKF--KVYII 170
                     677777777777888888888.555665.557****************888888....************************987888..88888 PP

                     -S CS
              B3  98 rk 99 
                     r+
  XP_024973592.1 171 RA 172
                     76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MTYSLGKRRK STPMRYGVFE TMEKKRSHSK PKVVVHDPSS KCLSSQNESS ATKCFKLAAG  60
NSLAMIRAEE VQSSLGTEHP SCIKLMVKAH VDIGYWMGFP QLFGKLFLPK TDTTMVIEDE  120
NGDVYHIRYI ARKNGLSAGW KKFADWHNLL EGDILVFHLV EPCKFKVYII RANYLNEVDG  180
ALSLLNLEAH TETDAPSSTT QSKRPKSLPL IVVQKKHKLS TPRSQMSNHP IDHSGNDSEE  240
VRSEVLEGSR PSKPDLSFQE LKTFEDFRIM VKGTCIDSEL PDDVRMNYYK LCNSRKEILH  300
DSLPEGLYYK LVAGMIGETV NIANEIKNLK ITTTKEELEV WDNSLKSFNL MGMKVGFLCD  360
RIHMLARIAF ESEGRVDIER YTKAKNEQKG FKDEIEKVTE RLAELNESHR KMEGIVDGLK  420
QKVGKHEMKF QKEVDAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12428KKRSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-31B3 family protein