PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973587.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 783aa MW: 86103.8 Da PI: 8.3196

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7.4e-19	289	388	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++ + e + XP_024973587.1 289 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIKIRDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRLD-PEDK 381 99************************666667778***********99899999999.*******************766.5555 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_024973587.1 382 LVIGCRK 388 6666654 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MSSPVKICMN GLCGATTTPQ WKRGWPMKAG GFATLCYPCG STYDNLNYCE RFHLNEPGWR 60 ECKFCDKSVA NEIPNGFARF SGNWHPSVFS NQMNNGTSFD KGKLAQLNEG LEKHQKASST 120 SSIGRQFKQE EPSSGEFGIG TSSNKDAGSS FRNHPLPLSS IFQNQLPLVT VPDTNKPKLG 180 FQQSFGLNLG TPSSSIVPTS NGIAMQEKVP TFKQEQRPHQ MLSKPSKSGV SVRSQTIKGM 240 GSDNRVARAP AEGRGRSQLL PRYWPKITDQ ELLQISGDLN ANCTITPLFE KVLSASDAGR 300 IGRLVLPKAC AEAYFPPINQ SEGLPIKIRD IKGKEWTFQF RFWPNNNSRM YVLEGVTPCI 360 QNMQLQAGDT VIFSRLDPED KLVIGCRKAI IPAGASALPN AVNGAVCTGN GNSPINTERE 420 GMTNWDPVTR PAIQEKKKAR TIGLKSKRLH MHSEDAMELK FTWEEAQDFL RPPPAKPTVV 480 VIENFELEEY DEPPVFGKRT IFTMTASRLQ EQWVQCDSCS KWRKLPSDVL IPSKWTCSHN 540 VSDPDRCSCS APEEKEVGDL DRILRLSKES KKRKITENWE TEDQQLEPSG LDALATAAVL 600 GTNGGELGES LVGPTTRHPR HRPGCTCIVC IQPPSGKGKH KPTCICNVCS TVRRRFKTLM 660 LRKRKRLSEP DGETGQKSLV PLIKGSESVD GLGTGVGIDA MSEGSNKGQE LDLNCDPKEE 720 EMLLAEAANA SSIPSQWHNM LEGPVPNGTS DIKDGPMQIN NKVIEGRDGQ ETVPVRAQIG 780 PAP

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MSSPVKICMN GLCGATTTPQ WKRGWPMKAG GFATLCYPCG STYDNLNYCE RFHLNEPGWR  60
ECKFCDKSVA NEIPNGFARF SGNWHPSVFS NQMNNGTSFD KGKLAQLNEG LEKHQKASST  120
SSIGRQFKQE EPSSGEFGIG TSSNKDAGSS FRNHPLPLSS IFQNQLPLVT VPDTNKPKLG  180
FQQSFGLNLG TPSSSIVPTS NGIAMQEKVP TFKQEQRPHQ MLSKPSKSGV SVRSQTIKGM  240
GSDNRVARAP AEGRGRSQLL PRYWPKITDQ ELLQISGDLN ANCTITPLFE KVLSASDAGR  300
IGRLVLPKAC AEAYFPPINQ SEGLPIKIRD IKGKEWTFQF RFWPNNNSRM YVLEGVTPCI  360
QNMQLQAGDT VIFSRLDPED KLVIGCRKAI IPAGASALPN AVNGAVCTGN GNSPINTERE  420
GMTNWDPVTR PAIQEKKKAR TIGLKSKRLH MHSEDAMELK FTWEEAQDFL RPPPAKPTVV  480
VIENFELEEY DEPPVFGKRT IFTMTASRLQ EQWVQCDSCS KWRKLPSDVL IPSKWTCSHN  540
VSDPDRCSCS APEEKEVGDL DRILRLSKES KKRKITENWE TEDQQLEPSG LDALATAAVL  600
GTNGGELGES LVGPTTRHPR HRPGCTCIVC IQPPSGKGKH KPTCICNVCS TVRRRFKTLM  660
LRKRKRLSEP DGETGQKSLV PLIKGSESVD GLGTGVGIDA MSEGSNKGQE LDLNCDPKEE  720
EMLLAEAANA SSIPSQWHNM LEGPVPNGTS DIKDGPMQIN NKVIEGRDGQ ETVPVRAQIG  780
PAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	661	667	LRKRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein