PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973586.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 820aa MW: 90084.6 Da PI: 8.376

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	7.9e-19	326	425	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++ + e + XP_024973586.1 326 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIKIRDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRLD-PEDK 418 99************************666667778***********99899999999.*******************766.5555 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_024973586.1 419 LVIGCRK 425 6666654 PP

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence
MSSPVKICMN GLCGATTTPQ WKRGWPMKAG GFATLCYPCG STYDNLNYCE RFHLNEPGWR 60 ECKFCDKPVH CGCVVSKYLH ECLDLGGISC IKCARSKAIQ PLKQSVANEI PNGFARFSGN 120 WHPSVFSNQM NNGTSFDKGK LAQLNEGLEK HQKASSTSSI GRQFKQEEPS SGEFGIGTSS 180 NKDAGSSFRN HPLPLSSIFQ NQLPLVTVPD TNKPKLGFQQ SFGLNLGTPS SSIVPTSNGI 240 AMQEKVPTFK QEQRPHQMLS KPSKSGVSVR SQTIKGMGSD NRVARAPAEG RGRSQLLPRY 300 WPKITDQELL QISGDLNANC TITPLFEKVL SASDAGRIGR LVLPKACAEA YFPPINQSEG 360 LPIKIRDIKG KEWTFQFRFW PNNNSRMYVL EGVTPCIQNM QLQAGDTVIF SRLDPEDKLV 420 IGCRKAIIPA GASALPNAVN GAVCTGNGNS PINTEREGMT NWDPVTRPAI QEKKKARTIG 480 LKSKRLHMHS EDAMELKFTW EEAQDFLRPP PAKPTVVVIE NFELEEYDEP PVFGKRTIFT 540 MTASRLQEQW VQCDSCSKWR KLPSDVLIPS KWTCSHNVSD PDRCSCSAPE EKEVGDLDRI 600 LRLSKESKKR KITENWETED QQLEPSGLDA LATAAVLGTN GGELGESLVG PTTRHPRHRP 660 GCTCIVCIQP PSGKGKHKPT CICNVCSTVR RRFKTLMLRK RKRLSEPDGE TGQKSLVPLI 720 KGSESVDGLG TGVGIDAMSE GSNKGQELDL NCDPKEEEML LAEAANASSI PSQWHNMLEG 780 PVPNGTSDIK DGPMQINNKV IEGRDGQETV PVRAQIGPAP

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence

MSSPVKICMN GLCGATTTPQ WKRGWPMKAG GFATLCYPCG STYDNLNYCE RFHLNEPGWR  60
ECKFCDKPVH CGCVVSKYLH ECLDLGGISC IKCARSKAIQ PLKQSVANEI PNGFARFSGN  120
WHPSVFSNQM NNGTSFDKGK LAQLNEGLEK HQKASSTSSI GRQFKQEEPS SGEFGIGTSS  180
NKDAGSSFRN HPLPLSSIFQ NQLPLVTVPD TNKPKLGFQQ SFGLNLGTPS SSIVPTSNGI  240
AMQEKVPTFK QEQRPHQMLS KPSKSGVSVR SQTIKGMGSD NRVARAPAEG RGRSQLLPRY  300
WPKITDQELL QISGDLNANC TITPLFEKVL SASDAGRIGR LVLPKACAEA YFPPINQSEG  360
LPIKIRDIKG KEWTFQFRFW PNNNSRMYVL EGVTPCIQNM QLQAGDTVIF SRLDPEDKLV  420
IGCRKAIIPA GASALPNAVN GAVCTGNGNS PINTEREGMT NWDPVTRPAI QEKKKARTIG  480
LKSKRLHMHS EDAMELKFTW EEAQDFLRPP PAKPTVVVIE NFELEEYDEP PVFGKRTIFT  540
MTASRLQEQW VQCDSCSKWR KLPSDVLIPS KWTCSHNVSD PDRCSCSAPE EKEVGDLDRI  600
LRLSKESKKR KITENWETED QQLEPSGLDA LATAAVLGTN GGELGESLVG PTTRHPRHRP  660
GCTCIVCIQP PSGKGKHKPT CICNVCSTVR RRFKTLMLRK RKRLSEPDGE TGQKSLVPLI  720
KGSESVDGLG TGVGIDAMSE GSNKGQELDL NCDPKEEEML LAEAANASSI PSQWHNMLEG  780
PVPNGTSDIK DGPMQINNKV IEGRDGQETV PVRAQIGPAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	698	704	LRKRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein