PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973435.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 498aa MW: 54393.4 Da PI: 4.9621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	308	350	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_024973435.1 308 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 350 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MLSEDNISVW MADQRENQIN TTTTINGNNG GDEIGVNSLT SFKSMLEIEE NNDNNWYLTQ 60 HNHHENNLPF SPQNLILRSV EGSSSCSPNS VSLFQNLDPN HAQFFMPPKP TISSFLNTVS 120 DNPLDSSFDI EAGFLAINTG NEDLPEFGEL GSHNQMGISN LSSDVHFSTT HLPQPAGNGY 180 GSSSFLKPLE NLGSTGAQPT LFQKRARRNS SDTNNGGGDL GVLDEGIINE NKRKRSNGSW 240 EDVENMSFDG SGLNYDSDDF TENTDYKFEE NGVKIGGGST SNGNSTITGG GGDDRKGKKK 300 GLPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINELNHE 360 LESTPSSSSL VPAAATAAAT GFYPLTPTAT TIPSCIKEEA FPSALLSPTG QPIRIEVRQR 420 EGKAVNIHMF CSRRPGLLLS IMRTLDTLGL DIQQAVISCF NGFALDVFRA EQCHEGQDVH 480 PDQIKAMLLE SAGYHGVA

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MLSEDNISVW MADQRENQIN TTTTINGNNG GDEIGVNSLT SFKSMLEIEE NNDNNWYLTQ  60
HNHHENNLPF SPQNLILRSV EGSSSCSPNS VSLFQNLDPN HAQFFMPPKP TISSFLNTVS  120
DNPLDSSFDI EAGFLAINTG NEDLPEFGEL GSHNQMGISN LSSDVHFSTT HLPQPAGNGY  180
GSSSFLKPLE NLGSTGAQPT LFQKRARRNS SDTNNGGGDL GVLDEGIINE NKRKRSNGSW  240
EDVENMSFDG SGLNYDSDDF TENTDYKFEE NGVKIGGGST SNGNSTITGG GGDDRKGKKK  300
GLPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINELNHE  360
LESTPSSSSL VPAAATAAAT GFYPLTPTAT TIPSCIKEEA FPSALLSPTG QPIRIEVRQR  420
EGKAVNIHMF CSRRPGLLLS IMRTLDTLGL DIQQAVISCF NGFALDVFRA EQCHEGQDVH  480
PDQIKAMLLE SAGYHGVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	316	KKKGLPAKNLMAERRRRKK
2	310	317	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-101	bHLH family protein