PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973333.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SRS

Protein Properties

Length: 405aa MW: 43346.4 Da PI: 7.528

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	206.8	5.9e-64	152	333	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......................aeaaskr 74 g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+th+kstWvpaakrrerqqqla++++++++++ ++++kr XP_024973333.1 152 GGGMNCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHIKSTWVPAAKRRERQQQLASLTQQQQQQQhnlgnhqlslmmrgggsggagdgIDQNPKR 246 5789**************************************************99998887778999999999999998775555666 PP DUF702 75 krel........kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 re+ + a++ ss+++++++e+ ++P+evss+avfrcvrvs++d++ee+laYqtav+igGhvfkGiLyd+G+e XP_024973333.1 247 LREDhhlltvggGAGGGGAVAVNLPSSHHHNTSSEVGHFPAEVSSPAVFRCVRVSAMDEAEEQLAYQTAVNIGGHVFKGILYDHGPE 333 66557777776545555666666667777888899999*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MSGFFSLGGG FGIGKDDEQR HDQNQEQEDS IITPNSLYLF KNEEIYSKGF ELWQQYYQLH 60 QHRQQHHHQQ PPHYDLGVAG RRRSGTASGG LDDLCLNSSN NNNNNNHLYS SSWNNIISRS 120 VGSGEGTKVM RQAGYGIGGD HGGGGSSSGG GGGGMNCQDC GNQAKKDCQH MRCRTCCKSR 180 GFQCQTHIKS TWVPAAKRRE RQQQLASLTQ QQQQQQHNLG NHQLSLMMRG GGSGGAGDGI 240 DQNPKRLRED HHLLTVGGGA GGGGAVAVNL PSSHHHNTSS EVGHFPAEVS SPAVFRCVRV 300 SAMDEAEEQL AYQTAVNIGG HVFKGILYDH GPEGRYNHPG GGDSSSAGGG GGQHQQLNLI 360 TSGTMGIATT SVNPNVTSSI DPSSIYPTPL NAFMAGTQFF PPPRS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MSGFFSLGGG FGIGKDDEQR HDQNQEQEDS IITPNSLYLF KNEEIYSKGF ELWQQYYQLH  60
QHRQQHHHQQ PPHYDLGVAG RRRSGTASGG LDDLCLNSSN NNNNNNHLYS SSWNNIISRS  120
VGSGEGTKVM RQAGYGIGGD HGGGGSSSGG GGGGMNCQDC GNQAKKDCQH MRCRTCCKSR  180
GFQCQTHIKS TWVPAAKRRE RQQQLASLTQ QQQQQQHNLG NHQLSLMMRG GGSGGAGDGI  240
DQNPKRLRED HHLLTVGGGA GGGGAVAVNL PSSHHHNTSS EVGHFPAEVS SPAVFRCVRV  300
SAMDEAEEQL AYQTAVNIGG HVFKGILYDH GPEGRYNHPG GGDSSSAGGG GGQHQQLNLI  360
TSGTMGIATT SVNPNVTSSI DPSSIYPTPL NAFMAGTQFF PPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-65	SRS family protein