PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973332.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 356aa    MW: 39387.5 Da    PI: 7.5721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.4e-052522911155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++++ +      +K + a++L +A+ YIk Lq
  XP_024973332.1 252 IRKEKLGDRISALQQMVAPF-----GKTDTASVLMEAIGYIKFLQ 291
                     57788999*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MAQDMGLPWT TTIPMENFMA HEVQHLARIK HELCVSGSYP EISEIISSSP TSSIEDLQLQ  60
SSPSFVSKNN HQRIRYNDDH NNQDMLLKTF SNGCQIRGDH QMLMYQIPSS VESSVSYLND  120
TNSSYRGTFS QIFPTLNIPS LNQSPSSFDI NLPALDPFGS PTFNASFSHQ PSSLNGHHNI  180
GVGLFRETCL SYGLDQMHHP QEVCLGKISP AFITETTEAK RPASNYTTDA KAATPPKKSK  240
LELRPSCAPL KIRKEKLGDR ISALQQMVAP FGKTDTASVL MEAIGYIKFL QNQVETLSVP  300
YMNSTQKANR TSSRGGSIKD VNEETKRDLR SRGLCLVPLS CLSYVTYGGG SIWATP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.19e-55bHLH family protein