PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973331.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 372aa    MW: 41354.3 Da    PI: 6.7888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-052683071155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++++ +      +K + a++L +A+ YIk Lq
  XP_024973331.1 268 IRKEKLGDRISALQQMVAPF-----GKTDTASVLMEAIGYIKFLQ 307
                     57788999*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MESANFHHHQ QEEDHQILVD SSCYGLASYQ NPILSMENFM AHEVQHLARI KHELCVSGSY  60
PEISEIISSS PTSSIEDLQL QSSPSFVSKN NHQRIRYNDD HNNQDMLLKT FSNGCQIRGD  120
HQMLMYQIPS SVESSVSYLN DTNSSYRGTF SQIFPTLNIP SLNQSPSSFD INLPALDPFG  180
SPTFNASFSH QPSSLNGHHN IGVGLFRETC LSYGLDQMHH PQEISPAFIT ETTEAKRPAS  240
NYTTDAKAAT PPKKSKLELR PSCAPLKIRK EKLGDRISAL QQMVAPFGKT DTASVLMEAI  300
GYIKFLQNQV ETLSVPYMNS TQKANRTSSR GGSIKDVNEE TKRDLRSRGL CLVPLSCLSY  360
VTYGGGSIWA TP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.19e-56bHLH family protein