PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973077.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 188aa    MW: 21280.1 Da    PI: 9.3395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-051364455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + +E++RR ++++   +L +++P++s++p k     +   +   YIk+Lq
  XP_024973077.1 13 ERKTIEKNRRIHMKNLCYKLTSVVPSLSSQPYKCFPQDSLFDQSAAYIKQLQ 64
                    5689**********************87777666888888888888888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MMKKYDGGSR KLERKTIEKN RRIHMKNLCY KLTSVVPSLS SQPYKCFPQD SLFDQSAAYI  60
KQLQNRIEQL KEKRDATSRL LNNGTRNDPS CYDQPAVSCD GVRLPTVEVK EFDDGLQVNL  120
TSGSERNFTF SDVVRIVEDG GAEVVKSGYT TVGGKVFYTL HAQARVSRIG VEITSVYERL  180
QELVNRST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-25bHLH family protein