PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973075.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 556aa    MW: 62916.6 Da    PI: 4.7524
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.91.8e-1341895563374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     elL+ecA avs+g+ e+a++++++l++++s dg+p qR+ ay++eALaar+a s+++lykal+++e +   s+++l+a+++++ev+P+++f++++
  XP_024973075.1 189 ELLFECAIAVSEGNIEEASNMINELRQTVSIDGEPSQRISAYMVEALAARVATSGNGLYKALKCKEPP---STDRLSAMQVLFEVCPCFRFGFMA 280
                     79*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aIlea+ ge+rvHiiDfdi+qG Q+++Llq+La++ +++p+lR+Tgv++pes+      l+++g rL+++A++ +++fefn+ va +++ ++
  XP_024973075.1 281 ANGAILEAFVGEKRVHIIDFDINQGSQYITLLQTLAKQ-NPKPRLRLTGVDDPESVqrPIGGLNHIGLRLKELAKSHHLDFEFNA-VAANTAVIQ 373
                     ************************************95.999************99888899***********************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L++++gEa++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+rf ea +yysa+fdsl+a+lpres+er++v
  XP_024973075.1 374 PETLNCRQGEAVIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTAPFLHRFHEAYSYYSAMFDSLDATLPRESQERVNV 468
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++l+r+ivn++aceg+er+er e  +kW++r+++aGF+p p++ ++ ++++ l+++++++ y+++ e +++ +gW+d+ L+++SaWr
  XP_024973075.1 469 EKQCLARDIVNIIACEGEERIERYEVSGKWKARMMMAGFRPCPITRNVDDTIRKLIKEYSER-YTMKVETNAIHFGWEDKVLIVASAWR 556
                     ************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MIRSVSPFEN RKLYLLNGTK ESTSMPTSLF NEHQIVYSST QSYSNESYDP AKYFLVSPTE  60
EHNSGNCLTS SYELLPAQED TFNAFQSSLE PEYLLSDNFE GLSYDEDKMR LKLQELEKVL  120
LDDDNGNEND DSDPSRSMEI EGDWGYSVND NLHESPKESS SYDSYVSSIS SSKEVSLNTQ  180
RAHATTPKEL LFECAIAVSE GNIEEASNMI NELRQTVSID GEPSQRISAY MVEALAARVA  240
TSGNGLYKAL KCKEPPSTDR LSAMQVLFEV CPCFRFGFMA ANGAILEAFV GEKRVHIIDF  300
DINQGSQYIT LLQTLAKQNP KPRLRLTGVD DPESVQRPIG GLNHIGLRLK ELAKSHHLDF  360
EFNAVAANTA VIQPETLNCR QGEAVIVNFA FQLHHMPDES VSTVNQRDQL LRMVKSLNPK  420
LVTVVEQDMN TNTAPFLHRF HEAYSYYSAM FDSLDATLPR ESQERVNVEK QCLARDIVNI  480
IACEGEERIE RYEVSGKWKA RMMMAGFRPC PITRNVDDTI RKLIKEYSER YTMKVETNAI  540
HFGWEDKVLI VASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein