PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024973072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GRAS | ||||||||
Protein Properties | Length: 556aa MW: 62916.6 Da PI: 4.7524 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.9 | 1.8e-134 | 189 | 556 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 elL+ecA avs+g+ e+a++++++l++++s dg+p qR+ ay++eALaar+a s+++lykal+++e + s+++l+a+++++ev+P+++f++++ XP_024973072.1 189 ELLFECAIAVSEGNIEEASNMINELRQTVSIDGEPSQRISAYMVEALAARVATSGNGLYKALKCKEPP---STDRLSAMQVLFEVCPCFRFGFMA 280 79*****************************************************************9...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aIlea+ ge+rvHiiDfdi+qG Q+++Llq+La++ +++p+lR+Tgv++pes+ l+++g rL+++A++ +++fefn+ va +++ ++ XP_024973072.1 281 ANGAILEAFVGEKRVHIIDFDINQGSQYITLLQTLAKQ-NPKPRLRLTGVDDPESVqrPIGGLNHIGLRLKELAKSHHLDFEFNA-VAANTAVIQ 373 ************************************95.999************99888899***********************.7999***** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L++++gEa++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+rf ea +yysa+fdsl+a+lpres+er++v XP_024973072.1 374 PETLNCRQGEAVIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTAPFLHRFHEAYSYYSAMFDSLDATLPRESQERVNV 468 *********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+++l+r+ivn++aceg+er+er e +kW++r+++aGF+p p++ ++ ++++ l+++++++ y+++ e +++ +gW+d+ L+++SaWr XP_024973072.1 469 EKQCLARDIVNIIACEGEERIERYEVSGKWKARMMMAGFRPCPITRNVDDTIRKLIKEYSER-YTMKVETNAIHFGWEDKVLIVASAWR 556 ************************************************************66.*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence |
MIRSVSPFEN RKLYLLNGTK ESTSMPTSLF NEHQIVYSST QSYSNESYDP AKYFLVSPTE 60 EHNSGNCLTS SYELLPAQED TFNAFQSSLE PEYLLSDNFE GLSYDEDKMR LKLQELEKVL 120 LDDDNGNEND DSDPSRSMEI EGDWGYSVND NLHESPKESS SYDSYVSSIS SSKEVSLNTQ 180 RAHATTPKEL LFECAIAVSE GNIEEASNMI NELRQTVSID GEPSQRISAY MVEALAARVA 240 TSGNGLYKAL KCKEPPSTDR LSAMQVLFEV CPCFRFGFMA ANGAILEAFV GEKRVHIIDF 300 DINQGSQYIT LLQTLAKQNP KPRLRLTGVD DPESVQRPIG GLNHIGLRLK ELAKSHHLDF 360 EFNAVAANTA VIQPETLNCR QGEAVIVNFA FQLHHMPDES VSTVNQRDQL LRMVKSLNPK 420 LVTVVEQDMN TNTAPFLHRF HEAYSYYSAM FDSLDATLPR ESQERVNVEK QCLARDIVNI 480 IACEGEERIE RYEVSGKWKA RMMMAGFRPC PITRNVDDTI RKLIKEYSER YTMKVETNAI 540 HFGWEDKVLI VASAWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | GRAS family protein |