PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973044.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 369aa MW: 41339.4 Da PI: 7.7707

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.8	2.7e-36	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++ XP_024973044.1 27 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCE 112 9***************************************************************99.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ XP_024973044.1 113 IHRRKTS 119 **987 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MAMMLDNSCE GGILLSLDSH KAVPAPFLTK TYQLVDDPST DHIVSWGEDD TTFVVWRPPE 60 FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFKKGEKHLL CEIHRRKTSQ 120 PQVTVNHHHH PHHFTGIGTG GGLQGGNNFF SYPTTRSISP PDSDDHLCCD NSPPLSSPTT 180 TTTTAGMLGI FHNSNHSISS GRGGNSVTAL SEDNERLRRS NNMLMSELAH MRKLYNDIIY 240 FVQNHVKPVA PSNSYPSSLL LSSTNSNMNG QLLMQKQQQQ QSFLNMGTNF NAASGYPNKS 300 QQLHASTINN IVDDNVNVSR TKLFGVPLLS KKRLHPEYGT NNTMVETHKA RLVLENDDLG 360 LNLMPPSPC

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MAMMLDNSCE GGILLSLDSH KAVPAPFLTK TYQLVDDPST DHIVSWGEDD TTFVVWRPPE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFKKGEKHLL CEIHRRKTSQ  120
PQVTVNHHHH PHHFTGIGTG GGLQGGNNFF SYPTTRSISP PDSDDHLCCD NSPPLSSPTT  180
TTTTAGMLGI FHNSNHSISS GRGGNSVTAL SEDNERLRRS NNMLMSELAH MRKLYNDIIY  240
FVQNHVKPVA PSNSYPSSLL LSSTNSNMNG QLLMQKQQQQ QSFLNMGTNF NAASGYPNKS  300
QQLHASTINN IVDDNVNVSR TKLFGVPLLS KKRLHPEYGT NNTMVETHKA RLVLENDDLG  360
LNLMPPSPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-100	HSF family protein