PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972916.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 450aa MW: 50179.9 Da PI: 7.1249

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5.3e-41	155	230	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C+v gC+++ls++k+yhrrhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk++ XP_024972916.1 155 CKVYGCNKNLSNCKDYHRRHKVCEAHSKTSKVIVNGIEQRFCQQCSRFHLLREFDDGKRSCRKRLAGHNERRRKPH 230 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MDSWSFSSVG KDFASDGSLS TSDAFGKDQI GSMGWEVKPP FVFENNMGLF PNEINIQNQV 60 FGDMDFPPLM INSLFNPVMA ASQNAFSEEN DSSSKLESNS RESGLFDLKL GRVIDPKEVQ 120 NYNPSKIAHN LSSSEVSMPS KRPREAGFGS SIPFCKVYGC NKNLSNCKDY HRRHKVCEAH 180 SKTSKVIVNG IEQRFCQQCS RFHLLREFDD GKRSCRKRLA GHNERRRKPH PGALAERYGR 240 LLPSYNVGVE GNESKGSTRA ISSFHIPDHL RSPYQPKHET DGRWQTNLEE NMAHDLQSIS 300 CITDEQLHSK SFHPYHFETD PRFDGVLNAP IGLSGIASSS ECALSLLSSD HQSRSSCNSS 360 RIPTSTNMFP ASHNHQDSGP LDTNPMVGFE GGLLKFGSKD MNYDDLVFPN EGCTIDLLQL 420 SSQLQRVDDH QKRRSQMKLA NGVSVGLSMT

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MDSWSFSSVG KDFASDGSLS TSDAFGKDQI GSMGWEVKPP FVFENNMGLF PNEINIQNQV  60
FGDMDFPPLM INSLFNPVMA ASQNAFSEEN DSSSKLESNS RESGLFDLKL GRVIDPKEVQ  120
NYNPSKIAHN LSSSEVSMPS KRPREAGFGS SIPFCKVYGC NKNLSNCKDY HRRHKVCEAH  180
SKTSKVIVNG IEQRFCQQCS RFHLLREFDD GKRSCRKRLA GHNERRRKPH PGALAERYGR  240
LLPSYNVGVE GNESKGSTRA ISSFHIPDHL RSPYQPKHET DGRWQTNLEE NMAHDLQSIS  300
CITDEQLHSK SFHPYHFETD PRFDGVLNAP IGLSGIASSS ECALSLLSSD HQSRSSCNSS  360
RIPTSTNMFP ASHNHQDSGP LDTNPMVGFE GGLLKFGSKD MNYDDLVFPN EGCTIDLLQL  420
SSQLQRVDDH QKRRSQMKLA NGVSVGLSMT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-46	SBP family protein