PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 410aa MW: 47227.2 Da PI: 5.7746 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.8 | 5.4e-36 | 133 | 229 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r++C+++C+lap+f e+++ f+n+hklFG++++l++l++++++++++am+s++y+A++r r Pv+G++g i +lq q++q+++el XP_024972717.1 133 ACAACKYQRKRCTPECALAPHFRPEHTEIFKNAHKLFGVRKILRILEKIDPSQKTEAMRSIIYQANMRDRFPVHGCLGEIYHLQYQIRQAEKELY 227 7*******************************************************************************************997 PP DUF260 96 ll 97 ++ XP_024972717.1 228 AV 229 66 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence |
MPCEYPIIPE ILRGHPIAYS LSATAEVPMV YLQQLWHTLT LSKEGDHLYF EGHVDEFMSR 60 LTLKRLRRIL RLPNPTDAFG SQQFDDFISN EELCHDIIYV FYDVHYMFSA IADRFILYVL 120 SEIMTLKGGT SQACAACKYQ RKRCTPECAL APHFRPEHTE IFKNAHKLFG VRKILRILEK 180 IDPSQKTEAM RSIIYQANMR DRFPVHGCLG EIYHLQYQIR QAEKELYAVL SHLHFYKQQS 240 PQQEITIDSS PESQLGMGLQ QSAANGLTLF QHQQQFLPVA PFFDQSYNNN NHSGIHFDSM 300 SNTGNDGMWL QQTYCNQNDG KTLVALQSQL LNTQPWTIQE EVTHDYDEIY PFFDTIDDTQ 360 SYIDSKDANE SSSESSLKET TQSVQHVAGN KLKRAELQLG IVSEDYQATV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-57 | LBD family protein |