PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972717.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 410aa MW: 47227.2 Da PI: 5.7746

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.8	5.4e-36	133	229	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r++C+++C+lap+f e+++ f+n+hklFG++++l++l++++++++++am+s++y+A++r r Pv+G++g i +lq q++q+++el XP_024972717.1 133 ACAACKYQRKRCTPECALAPHFRPEHTEIFKNAHKLFGVRKILRILEKIDPSQKTEAMRSIIYQANMRDRFPVHGCLGEIYHLQYQIRQAEKELY 227 7*******************************************************************************************997 PP DUF260 96 ll 97 ++ XP_024972717.1 228 AV 229 66 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MPCEYPIIPE ILRGHPIAYS LSATAEVPMV YLQQLWHTLT LSKEGDHLYF EGHVDEFMSR 60 LTLKRLRRIL RLPNPTDAFG SQQFDDFISN EELCHDIIYV FYDVHYMFSA IADRFILYVL 120 SEIMTLKGGT SQACAACKYQ RKRCTPECAL APHFRPEHTE IFKNAHKLFG VRKILRILEK 180 IDPSQKTEAM RSIIYQANMR DRFPVHGCLG EIYHLQYQIR QAEKELYAVL SHLHFYKQQS 240 PQQEITIDSS PESQLGMGLQ QSAANGLTLF QHQQQFLPVA PFFDQSYNNN NHSGIHFDSM 300 SNTGNDGMWL QQTYCNQNDG KTLVALQSQL LNTQPWTIQE EVTHDYDEIY PFFDTIDDTQ 360 SYIDSKDANE SSSESSLKET TQSVQHVAGN KLKRAELQLG IVSEDYQATV

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MPCEYPIIPE ILRGHPIAYS LSATAEVPMV YLQQLWHTLT LSKEGDHLYF EGHVDEFMSR  60
LTLKRLRRIL RLPNPTDAFG SQQFDDFISN EELCHDIIYV FYDVHYMFSA IADRFILYVL  120
SEIMTLKGGT SQACAACKYQ RKRCTPECAL APHFRPEHTE IFKNAHKLFG VRKILRILEK  180
IDPSQKTEAM RSIIYQANMR DRFPVHGCLG EIYHLQYQIR QAEKELYAVL SHLHFYKQQS  240
PQQEITIDSS PESQLGMGLQ QSAANGLTLF QHQQQFLPVA PFFDQSYNNN NHSGIHFDSM  300
SNTGNDGMWL QQTYCNQNDG KTLVALQSQL LNTQPWTIQE EVTHDYDEIY PFFDTIDDTQ  360
SYIDSKDANE SSSESSLKET TQSVQHVAGN KLKRAELQLG IVSEDYQATV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-57	LBD family protein