PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972695.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 392aa MW: 44701.8 Da PI: 4.4986

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.8	1.1e-16	160	244	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ +L+ea e+ + +r++l+ W+ev++k+ +e ++er+ +qC+++++ l+k+ykk+k ++ +++++++yf++++ XP_024972695.1 160 WSEHETFVLLEAWGERFVQRGRKSLRSEEWQEVADKVsQESKIERTDTQCRNRLDTLKKKYKKEKSLLGSS-RNQTTKWVYFKKMD 244 ***********************************88999***********************97.556669*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MMDETEGESR YPANYGVNQG FGSTQRPKAS VRNVPHPHSQ EIADNYVDED EEELEEDEEE 60 QEVDGGDDEM NGGIHQNGDD DDDDDDTEED DDGENHSRSD NFNLHRHPKK RKLKSLLSSF 120 EFAPRLPLPP PRPPQPLQPS PAAASATKPS FGGRNTLTDW SEHETFVLLE AWGERFVQRG 180 RKSLRSEEWQ EVADKVSQES KIERTDTQCR NRLDTLKKKY KKEKSLLGSS RNQTTKWVYF 240 KKMDMLMSST IQQAGLSCGV DSGEYVFMNP TVYLNHANGL DEMRDSPGNT DSQEGDDDSD 300 PLPLKRSKEK GDGINGGSFR LLADSINKFS EIYEKIENGK RKQMVELEKM RMEFHRELES 360 QKREILDRAR DEIAKIRGGD YEENDSAENI SG

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MMDETEGESR YPANYGVNQG FGSTQRPKAS VRNVPHPHSQ EIADNYVDED EEELEEDEEE  60
QEVDGGDDEM NGGIHQNGDD DDDDDDTEED DDGENHSRSD NFNLHRHPKK RKLKSLLSSF  120
EFAPRLPLPP PRPPQPLQPS PAAASATKPS FGGRNTLTDW SEHETFVLLE AWGERFVQRG  180
RKSLRSEEWQ EVADKVSQES KIERTDTQCR NRLDTLKKKY KKEKSLLGSS RNQTTKWVYF  240
KKMDMLMSST IQQAGLSCGV DSGEYVFMNP TVYLNHANGL DEMRDSPGNT DSQEGDDDSD  300
PLPLKRSKEK GDGINGGSFR LLADSINKFS EIYEKIENGK RKQMVELEKM RMEFHRELES  360
QKREILDRAR DEIAKIRGGD YEENDSAENI SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-64	Trihelix family protein