PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972573.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 527aa MW: 57987.4 Da PI: 7.9072

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.3	1e-16	264	313	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P+ ++K +Ka+ L ++++YI+ Lq XP_024972573.1 264 RSKHSATEQRRRSKINDRFSMLRELIPHG----DQKRDKASFLLEVIDYIHFLQ 313 889***********************7....7****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MELPQPRPFG TQGRKSTHDF LSLYSPAQQD PSPNPPGGYL ETHDFLQPLE RVGNNVAREG 60 NKAEEPQSRK SLPPTPPTTV EHILPGGIGT YSISHISCLN QSQRIPKPEE VAAQSSGSDK 120 NDENSNCSSY TGSGFSLWEE SAVKKGKTGK ENIAGNRHVI REGGMKIGGV PWMTSMERPS 180 QSSSAHNHPS ATISSLSSSR PSSAQKNPSF VDMLNSAKST QEDEDEEEEE EEFVIKKEPT 240 LHYNGVLSVK VDTAHHDQKP NTPRSKHSAT EQRRRSKIND RFSMLRELIP HGDQKRDKAS 300 FLLEVIDYIH FLQEKVNKYE DSCLRGWNNE PPANAIIPWN NNQRPSEGFV EQPRVQNALV 360 FAPKLNENKG SFGAKKGKNL LDSEVKEIGG LTNKASPLGS NIYSPAGCPS TQLASDTASQ 420 LWQSRSCTTD CIAGDKLKEK ELTIESGTIS ISTIYSQGLL TSLTQALQSS GVDLSQANIS 480 VQIDLGKKPI LKKNEVGNDE TVRRSRVASS REEKSDKGLK RFKSSRN

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MELPQPRPFG TQGRKSTHDF LSLYSPAQQD PSPNPPGGYL ETHDFLQPLE RVGNNVAREG  60
NKAEEPQSRK SLPPTPPTTV EHILPGGIGT YSISHISCLN QSQRIPKPEE VAAQSSGSDK  120
NDENSNCSSY TGSGFSLWEE SAVKKGKTGK ENIAGNRHVI REGGMKIGGV PWMTSMERPS  180
QSSSAHNHPS ATISSLSSSR PSSAQKNPSF VDMLNSAKST QEDEDEEEEE EEFVIKKEPT  240
LHYNGVLSVK VDTAHHDQKP NTPRSKHSAT EQRRRSKIND RFSMLRELIP HGDQKRDKAS  300
FLLEVIDYIH FLQEKVNKYE DSCLRGWNNE PPANAIIPWN NNQRPSEGFV EQPRVQNALV  360
FAPKLNENKG SFGAKKGKNL LDSEVKEIGG LTNKASPLGS NIYSPAGCPS TQLASDTASQ  420
LWQSRSCTTD CIAGDKLKEK ELTIESGTIS ISTIYSQGLL TSLTQALQSS GVDLSQANIS  480
VQIDLGKKPI LKKNEVGNDE TVRRSRVASS REEKSDKGLK RFKSSRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-73	bHLH family protein