PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972496.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 359aa MW: 40982.4 Da PI: 7.1152

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.4	1.3e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+++ +vi+evd++kvePwdL+++++ ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + XP_024972496.1 8 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-DVIREVDLNKVEPWDLQERCNIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 101 69**************************.99**********964444222456********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + e++g++ktLvfy+grap+g+ktdW+mheyrle XP_024972496.1 102 RN-TFEKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 9.8899***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MASSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMDVI REVDLNKVEP WDLQERCNIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTFEKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDND EQHDPLNPTL TSHEDGWVIC RVFKKKNLFK VGGTERSRGS 180 MGSDQLDHGS NQPGSFSHPN HQYLPYHQDP PHQLQTFVDI GLNHGHLPHH HHQYPHLQAQ 240 NFIPTHKPLG YDFSNLPSED SPVMVKQLMT NHGECDSGSC GNQQLNPVAY QACEPGLEVG 300 TCEPAQSLAN ATGTHDQDGD SSKGVQRYEN NANASSSSSM QQMNQIPLRG EMDFWRYGK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MASSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMDVI REVDLNKVEP WDLQERCNIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTFEKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDND EQHDPLNPTL TSHEDGWVIC RVFKKKNLFK VGGTERSRGS  180
MGSDQLDHGS NQPGSFSHPN HQYLPYHQDP PHQLQTFVDI GLNHGHLPHH HHQYPHLQAQ  240
NFIPTHKPLG YDFSNLPSED SPVMVKQLMT NHGECDSGSC GNQQLNPVAY QACEPGLEVG  300
TCEPAQSLAN ATGTHDQDGD SSKGVQRYEN NANASSSSSM QQMNQIPLRG EMDFWRYGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-118	NAC family protein