PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972315.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 832aa    MW: 92798 Da    PI: 6.8522
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24158259199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_024972315.1 158 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 249
                     99*****************************7333.34459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_024972315.1 250 GELRVGVRRA 259
                     99*****996 PP
2Auxin_resp119.62.5e-39284366183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha++t+++F+++Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gtvvg++++dp rWp+SkWr+Lk
  XP_024972315.1 284 ALHAIQTGTIFTIYYKPRTSPAEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTVVGIEESDPKRWPESKWRCLK 366
                     689******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    
MTSSEVSSKG NSSMRGDRDT FSLSGFSDKN DAVGDSRTVP AVSGAVDADV ALYKELWRAC  60
AGPLVTVPRE NELVFYFPQG HIEQVEASTH QVPEQQMPVY DLPSKILCRV VNVQLKAEQE  120
TDEVFAQITL MPEPDQDVNS VKKEPAPPAQ SRFHVHSFCK TLTASDTSTH GGFSVLRRHA  180
DECLPPLDMS RQPPTQELVA KDLHGNEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD  240
AFIFLRGENG ELRVGVRRAM RQQANVPSSV ISSHSMHLGV LATALHAIQT GTIFTIYYKP  300
RTSPAEFIVP YDQYMESIKN NYSIGMRFKM RFEGEEAPEQ RFTGTVVGIE ESDPKRWPES  360
KWRCLKVRWD ETSTIPRPER VSPWKIEPAL TPPAISPLPV HKQKRPRSSM LPSSPDSSVL  420
TREGPSKAAA ADPSPSNAFS RVLQGQELPA LRVPFAESNE SDSCNRPIQW PYSVIDEDKI  480
DAVSSRRYGT EKILPFGRPA ESSFTDLLSG FGAHNTSTEF SASSAGQTEE KFSLRSNPWS  540
TMPSNLSLNL LGSSIKGVQA GDIPYQARDG RSSAFGEYSV HLNRRGSEQQ HGKWMMPPPL  600
PSYLHMPSHS TEVMPKSPLS HQNEVRKPQD GNCKIFGVPL AGNKVASDEA GNSHQGLQSQ  660
SYPTLESDQR FEQSKSPKVI GKEREQQYQN SQPQVRDGHA KVQGVSTRSC TKVHKQGIAL  720
GRSLDLSKFN NYDELIAELD ELFEFNGELK TRNKTWLVVY TDDEGDMMLV GDDPWQEFCG  780
MVRKIFIYTR EEVQRMNLGS LNSRGEDNSS VAEGMDARDT KTLPSSSSPE HA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein