PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972261.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 324aa MW: 36256.7 Da PI: 6.1229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W++ ++ g++R++k+c++rw +yl XP_024972261.1 14 KGPWTPEEDQRLTDYIQKHGHGSWRALPKLAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54	3.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ +++++ lG++ W++Ia++++ gRt++++k++w+++l XP_024972261.1 67 RGKFSEEEESTILHLHSVLGNK-WSAIAAHLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MGRSPCCDEN NLKKGPWTPE EDQRLTDYIQ KHGHGSWRAL PKLAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEESTILH LHSVLGNKWS AIAAHLPGRT DNEIKNYWNT HLKKRLIQMG 120 IDPITHQPKT DLFSCLPQLI ALANLKELLE HTQLTHNLQC FNLFQQPAIA ANNLELNAMN 180 LMPANQEPNP YFSNNFQQEL GQERVEMSNF FPVENASIGD GGSQPLQQQV IVPFMNVKTS 240 DHHEVVGQCQ MGQMSDKSAS STWNPLPPLM DSTTSGSNSQ ENSSTISYGG GSGGGGGEGG 300 DSLFNWPDFL LEDSFLDYNL KEIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	9e-99	MYB family protein