PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 25926 Da PI: 5.7085 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 171 | 216 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++Le+AveY+k Lq XP_024972243.1 171 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ 216 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MMQPTGGGGG GGGGGGGGGG GLARFQSAPA TWLEQLLESD EDVIIDPPKP PLLPHHSIAT 60 ASSAITTTTT FVDPSMAGSG FLRQNSSPAE FLSQINNSDG YFSSYGIPAK ANYDDYLSSR 120 DVSLEDSQIK FTTQMSGDQS ALLDVEMDRI LGDTVPCRVR AKRGFATHPR SIAERVRRTR 180 ISDRIRKLQD LVPNMDKQTN TADMLEEAVE YVKFLQKQIQ DLTDHRNRCT CLVKEQGKG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 3e-57 | bHLH family protein |