PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024972196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92496.2 Da PI: 6.4637 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_024972196.1 18 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP | |||||||
2 | START | 150.7 | 1.3e-47 | 162 | 370 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+ + + g+++l XP_024972196.1 162 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVALEPT-RVAEILKDRPSWFRDCRAVEILNLLPTTngGTIELL 255 789*******************************************************.8888888888**************987667****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+ Rdf+ +Ry+ ++g++v++++S++++ + p+ +++vRae+lpSg+li+p+++g+s +++v+h++l+ ++++lr+l+ XP_024972196.1 256 YMQLYAPTTLATaRDFLLLRYTSVTEDGSLVVCERSLNNTHNGPSipsVPNFVRAEMLPSGCLIRPCEGGGSIIHIVDHMNLEVIAVPEVLRPLY 350 ********************************************999899********************************************* PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s ++ ++k+++ +l+++++ XP_024972196.1 351 ESPIVLAQKMTMMALRQLRQ 370 ***************99876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 842 aa Download sequence |
MMAMACKDGK GAIMDNGKYV RYTPEQVEAL ERLYHDCPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL SAMNKLLMEE NNRLQKQVSH LVYENGYFRQ 120 HTQNTSLATK DTSCESVVTN GQHRLTAQHP PRDASPAGLL SIAEETLTEF LSKATGTAIE 180 WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVALEPTR VAEILKDRPS WFRDCRAVEI 240 LNLLPTTNGG TIELLYMQLY APTTLATARD FLLLRYTSVT EDGSLVVCER SLNNTHNGPS 300 IPSVPNFVRA EMLPSGCLIR PCEGGGSIIH IVDHMNLEVI AVPEVLRPLY ESPIVLAQKM 360 TMMALRQLRQ IALEVSQSGS PNWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSLMANDG 420 VDDVTILVNS SPEKLMGFNP PFANGYQTVS NSVLCAKASM LLQNVPPALL LRFLREHRSE 480 WADNSIDAYS AAAVKLGPCS LPGSRVGNFG GQVILPLAHT IEHEELLEVI KMEGVGHCPE 540 DGLMPRDMFL LQLCNGMDEN AVGMCAELIF APIDASFADD APLLASGFRI IPLDPIKVRI 600 DEASSPNRTL DLASALEIGG SGTKISSDRN AASGTVRSVM TIAFEFAFES HMQESVASIA 660 RQYVRSIISS VQRVASALSP NMNPNLGLQA PLGTPEAHIL ARWICRSYSC YLGTELLKSE 720 GEGSEYILKS LWHHSDAIMC CSLKASPVFT FANQAGLDML ETTLVALQDI SLEKILDEHG 780 RKGLSAEFAQ IMQQGFACLQ GGVCSSSMGR PVSYERAVAW KVLNEEENAH CVCFTFINWS 840 FV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.2 | 0.0 | HD-ZIP family protein |