PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972195.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92073.7 Da    PI: 6.4635
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_024972195.1 18 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    5679*****************************************************97 PP
2START160.51.3e-501623702205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + +   g+++l 
  XP_024972195.1 162 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVALEPT-RVAEILKDRPSWFRDCRAVEILNLLPTTngGTIELL 255
                     789*******************************************************.8888888888**************987667****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+  Rdf+ +Ry+   ++g++v++++S++++ + p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_024972195.1 256 YMQLYAPTTLATaRDFLLLRYTSVTEDGSLVVCERSLNNTHNGPSipsVPNFVRAEMLPSGCLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 350
                     ********************************************999899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s ++ ++k+++ +l+++++
  XP_024972195.1 351 ESPIVLAQKMTMMALRQLRQ 370
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MMAMACKDGK GAIMDNGKYV RYTPEQVEAL ERLYHDCPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL SAMNKLLMEE NNRLQKQVSH LVYENGYFRQ  120
HTQNTSLATK DTSCESVVTN GQHRLTAQHP PRDASPAGLL SIAEETLTEF LSKATGTAIE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVALEPTR VAEILKDRPS WFRDCRAVEI  240
LNLLPTTNGG TIELLYMQLY APTTLATARD FLLLRYTSVT EDGSLVVCER SLNNTHNGPS  300
IPSVPNFVRA EMLPSGCLIR PCEGGGSIIH IVDHMNLEAW SVPEVLRPLY ESPIVLAQKM  360
TMMALRQLRQ IALEVSQSGS PNWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSLMANDG  420
VDDVTILVNS SPEKLMGFNP PFANGYQTVS NSVLCAKASM LLQNVPPALL LRFLREHRSE  480
WADNSIDAYS AAAVKLGPCS LPGSRVGNFG GQVILPLAHT IEHEELLEVI KMEGVGHCPE  540
DGLMPRDMFL LQLCNGMDEN AVGMCAELIF APIDASFADD APLLASGFRI IPLDPIKEAS  600
SPNRTLDLAS ALEIGGSGTK ISSDRNAASG TVRSVMTIAF EFAFESHMQE SVASIARQYV  660
RSIISSVQRV ASALSPNMNP NLGLQAPLGT PEAHILARWI CRSYSCYLGT ELLKSEGEGS  720
EYILKSLWHH SDAIMCCSLK ASPVFTFANQ AGLDMLETTL VALQDISLEK ILDEHGRKGL  780
SAEFAQIMQQ GFACLQGGVC SSSMGRPVSY ERAVAWKVLN EEENAHCVCF TFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein