PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 28291.1 Da PI: 7.5722 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_024972188.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 69.5 | 1e-23 | 85 | 176 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e+ +++s++qe+ +Lk++++ L++ R++ Ge+++sL+ +eL++Le+qL+ slk+iR+ +++ ll+++ e+qk+e++l e nk+Lr +l+e XP_024972188.1 85 KEDLQEQSSYQEYMRLKERYDALKQLERNYYGEEIDSLTTNELESLERQLHCSLKQIRTIRTQSLLDKLYEQQKMEHQLYESNKTLRLRLDE 176 678899*********************************************************************************88875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MGKGRLELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFSST 60 SSMLKTLERY EKCSFGPPEQ RKPAKEDLQE QSSYQEYMRL KERYDALKQL ERNYYGEEID 120 SLTTNELESL ERQLHCSLKQ IRTIRTQSLL DKLYEQQKME HQLYESNKTL RLRLDEESQA 180 EALQWDAHAN GMVYGHPHQM SRDAFYHPIG CETTLQIGYQ TEQMSAVTST SMNHQMQGWL 240 A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-96 | MIKC_MADS family protein |