PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972172.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 747aa MW: 86322.8 Da PI: 4.6694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.6e-22	141	224	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 k+Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + XP_024972172.1 141 KYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEAS-----SRRKETRTGCLAMIRLRLVESSRWRVDEVKLEHNHLF 224 69**************************************98877.....8999*****************************77 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MEDGSDKSEE LLEDDGGDHD IDSEQVFAIG NNDVETESLF GIEGDDLENG SELVLDIESH 60 EQENDSEQIL EFENNDLEDK DQMIEFRSNN HNTDGAQMLE IGNNNQDDAS ISDDQQDPSE 120 SKHNPPPVVG MEFESYEDAY KYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF 180 KTLKEASSRR KETRTGCLAM IRLRLVESSR WRVDEVKLEH NHLFDPERAQ NSKSHKRTDS 240 GVKRKLEPTV DVEVRTIKLY RTPIVDAICY GSSNERDFDN EFGKSKRLNL NKGDAQVIHD 300 YFCRVQLINP NFFYIMDFTD DGYVRNVFWI DSRARASYGY FGDVVSLDTT CLTSKYIVPL 360 VVFVGVNHHG QTISLGCALL ADESQETYTW LLRAWLTCMW GRPPQTIITD PSMTLQSAIA 420 EIFPRAHHRL CLPLVVERIL ESLANLESEV LPTVLNSIIY NSIKVEEFEV AWDDMIQRFA 480 IRDNEYLRKL FEDRERWAPV YSKDTYFAGM FTFQPGESTV PFFHGYVHQQ TSLKEFFEMH 540 DLVLQNKIQK EAFDDCESRD SNPKLRTICT YESQLSKVYT KQIFSLFQYE VEMMSNCFNI 600 SQVNTSGLIV TYMITEQETE GNSIRNLEVM FDKIGLEIRC ICSCFNFKGY LCRHALSVLN 660 HNGIDEIPSQ YILSRWRKDF KRLYVPDLGS DNVDVSSPVQ WFVHLHKQAL QVVEEGMTSQ 720 EHYMVAWQAF KESLNKVRLV SDKQAQS

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MEDGSDKSEE LLEDDGGDHD IDSEQVFAIG NNDVETESLF GIEGDDLENG SELVLDIESH  60
EQENDSEQIL EFENNDLEDK DQMIEFRSNN HNTDGAQMLE IGNNNQDDAS ISDDQQDPSE  120
SKHNPPPVVG MEFESYEDAY KYYNCYAKEL GFAIRVKSSW TKRNSKEKRG AVLCCNCEGF  180
KTLKEASSRR KETRTGCLAM IRLRLVESSR WRVDEVKLEH NHLFDPERAQ NSKSHKRTDS  240
GVKRKLEPTV DVEVRTIKLY RTPIVDAICY GSSNERDFDN EFGKSKRLNL NKGDAQVIHD  300
YFCRVQLINP NFFYIMDFTD DGYVRNVFWI DSRARASYGY FGDVVSLDTT CLTSKYIVPL  360
VVFVGVNHHG QTISLGCALL ADESQETYTW LLRAWLTCMW GRPPQTIITD PSMTLQSAIA  420
EIFPRAHHRL CLPLVVERIL ESLANLESEV LPTVLNSIIY NSIKVEEFEV AWDDMIQRFA  480
IRDNEYLRKL FEDRERWAPV YSKDTYFAGM FTFQPGESTV PFFHGYVHQQ TSLKEFFEMH  540
DLVLQNKIQK EAFDDCESRD SNPKLRTICT YESQLSKVYT KQIFSLFQYE VEMMSNCFNI  600
SQVNTSGLIV TYMITEQETE GNSIRNLEVM FDKIGLEIRC ICSCFNFKGY LCRHALSVLN  660
HNGIDEIPSQ YILSRWRKDF KRLYVPDLGS DNVDVSSPVQ WFVHLHKQAL QVVEEGMTSQ  720
EHYMVAWQAF KESLNKVRLV SDKQAQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein