PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 196aa MW: 23066.3 Da PI: 7.1453 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.3 | 9.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i++s+gk+yey+s XP_024972164.1 9 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 79.5 | 8e-27 | 71 | 160 | 1 | 94 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ged++sL+++eL e++Le++l++iR+kK+e+ +++ ++ q e+e++ L XP_024972164.1 71 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEELIAYEDALENGLTNIRDKKDEIPKMMRKHEQVLEEENK----HL 160 7899*******************************************************************98876666666665554....44 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MGRGKIEIKR IENTSNRQVT YSKRKNGIIK KAKEITVLCD ANVSLVIYGS SGKMYEYCSP 60 KTNLIDMLDR YQRLSGNKLW DAKHENLQNE IDRIKKENES MQIELRHLKG EDITSLNYEE 120 LIAYEDALEN GLTNIRDKKD EIPKMMRKHE QVLEEENKHL MYLVQQSEMA AMGDYQAHEP 180 FSFRVQPMQP NLHERM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 3e-85 | MIKC_MADS family protein |