PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972133.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 545aa    MW: 60425.1 Da    PI: 8.7932
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.5e-152233071198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + s  l +p +fa ++   ++++++++l +++g+sW+v+ i  ++ + ++++ +GW +Fv+ n+++++D+++F+l+g+ e  l+v ++r
  XP_024972133.1 223 SGSYTLNVPYQFAMAYL--PNCKVKIVLHNLKGESWTVNSIPtTRVQTSHTFCGGWLSFVRGNNINVRDVCIFELVGKCE--LRVNILR 307
                     55667999*****9996..4699*****************77566666699************************99544..4888876 PP
2B348.51.6e-15432519795
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + + + s  l +p +f  eh   +++ ++++l +++g+ W+v+ i + k ++ +++ +GW  Fv++ng++ gD+++F+l+gr e + +v+
  XP_024972133.1 432 KFNIGGSYTLKIPYQFSMEHL--PNCRTEIVLHNLKGECWTVNSIPTLKVQTlHTFCGGWMAFVRDNGIQMGDICIFELVGRCEMRVHVS 519
                     55556677899*****99996..45889****************8866666679999***********************9877755554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MMNARRPHFI KGFNPNISFD KLKIPSKFGK HLEGKTAGTV SLMGPSGNTW HADLAHQTDG  60
LFILDGWAAF IFDQSSCEKE TAFSAECHQD LSIFDQHFGK KREREYATML TNMVDGVPKK  120
ARSSQVHSEC VTKYHETTNI AEMQLGLQET MNGRCEVADF LNGSEFCGSA FKDSITPALP  180
VSEVSPTEDE LGRLSASEAD KIAQSFTSSF PHFTQVMKRF NISGSYTLNV PYQFAMAYLP  240
NCKVKIVLHN LKGESWTVNS IPTTRVQTSH TFCGGWLSFV RGNNINVRDV CIFELVGKCE  300
LRVNILRVRQ EAQDYEHDDV KGLANGASHK SSGRLTKKVK GNSRKTQKPT MIEGQKVAFS  360
IEKVKLGIAA KGTVLGSHSR TSNGKSGKPK SLQEKRGSSM LGCMSMKSAP EEKIAAESFI  420
SSFPYFVRVM KKFNIGGSYT LKIPYQFSME HLPNCRTEIV LHNLKGECWT VNSIPTLKVQ  480
TLHTFCGGWM AFVRDNGIQM GDICIFELVG RCEMRVHVSS VGKNVALDYQ IGHGPSNELD  540
NGSSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-11B3 family protein