PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972125.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 394aa MW: 44730 Da PI: 5.7934

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.8e-40	62	161	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++rrkCa+dC+lapyfp++++++f+n+hklFG+s ++k++++l+++++++am++++y++++ra+dPv G++++i++lq+q+e + ael+ XP_024972125.1 62 ACAACRYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSSITKIIRDLDPQQKDEAMRTIIYQSDVRAQDPVGGCYRIIRELQRQIEFSCAELE 156 7********************************************************************************************99 PP DUF260 96 llkee 100 + ++ XP_024972125.1 157 IVLHQ 161 88776 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MTNNHHNQNK IIHPHHHSHH HHLLPSSSTT TNRSNSSTIT TTTRSPSSTI TTATRSNSTT 60 QACAACRYQR RKCAPDCILA PYFPHDRQRQ FQNAHKLFGV SSITKIIRDL DPQQKDEAMR 120 TIIYQSDVRA QDPVGGCYRI IRELQRQIEF SCAELEIVLH QLAICRAHAA QNQNQNQTHH 180 HHDQILIDGV DCDIHLVSNP DDPHLYDDPS TVLDTDNANH QHHAGLDLDL GHIPQQQEHE 240 DHLVHGHDHD HEQYILGQQN LNDHDDGCED DHVVPLQEIN SWAAMNNSPP SSAVCLEVKP 300 PPLHASVDEC EDFKPLLISD IPAGERHEFK FEFDEINEPS EETLFSEGNH KALPKEENVS 360 FFTKEETVTY QQTNEDHDLK GAATLFTLTN CSSY

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MTNNHHNQNK IIHPHHHSHH HHLLPSSSTT TNRSNSSTIT TTTRSPSSTI TTATRSNSTT  60
QACAACRYQR RKCAPDCILA PYFPHDRQRQ FQNAHKLFGV SSITKIIRDL DPQQKDEAMR  120
TIIYQSDVRA QDPVGGCYRI IRELQRQIEF SCAELEIVLH QLAICRAHAA QNQNQNQTHH  180
HHDQILIDGV DCDIHLVSNP DDPHLYDDPS TVLDTDNANH QHHAGLDLDL GHIPQQQEHE  240
DHLVHGHDHD HEQYILGQQN LNDHDDGCED DHVVPLQEIN SWAAMNNSPP SSAVCLEVKP  300
PPLHASVDEC EDFKPLLISD IPAGERHEFK FEFDEINEPS EETLFSEGNH KALPKEENVS  360
FFTKEETVTY QQTNEDHDLK GAATLFTLTN CSSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-51	LBD family protein