PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972122.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 355aa MW: 38892.2 Da PI: 6.5075

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.3e-07	246	286	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+r+ +++ L++l+P + K++ a++L +A +Y+k L XP_024972122.1 246 ARQRRERVSERIRVLQKLVPGgN------KMDTASMLDEAANYLKFL 286 69****************955......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MDDLPFQCYN HHHHHDQQSL DFDSENMFLN PLIHQLPPTV WIDHDPAMAA AAADNLACIN 60 GFQETKNVIS ISTTTAATAT VTATESLDCL LSGTNSTTDA SDRISVIFSD CKSLWPKNNV 120 IIGNNNVSGL SSGDSVTKEI DDGVSQCSSG KRPITSVSGT GVSENNNPSK PKRSRSNSGR 180 PISSNINFQQ PGNPSETDME AIAQMKEMIY REAAFRPVSF TAETTVVDKP KRKNVRISND 240 PQTVAARQRR ERVSERIRVL QKLVPGGNKM DTASMLDEAA NYLKFLRSQV KALEQLGQNS 300 SSTTINANGT NPINTNKNLF GASMAVPFDH NPFSMQTHFH QICYENLYPN DPSSS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MDDLPFQCYN HHHHHDQQSL DFDSENMFLN PLIHQLPPTV WIDHDPAMAA AAADNLACIN  60
GFQETKNVIS ISTTTAATAT VTATESLDCL LSGTNSTTDA SDRISVIFSD CKSLWPKNNV  120
IIGNNNVSGL SSGDSVTKEI DDGVSQCSSG KRPITSVSGT GVSENNNPSK PKRSRSNSGR  180
PISSNINFQQ PGNPSETDME AIAQMKEMIY REAAFRPVSF TAETTVVDKP KRKNVRISND  240
PQTVAARQRR ERVSERIRVL QKLVPGGNKM DTASMLDEAA NYLKFLRSQV KALEQLGQNS  300
SSTTINANGT NPINTNKNLF GASMAVPFDH NPFSMQTHFH QICYENLYPN DPSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	252	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-42	bHLH family protein