PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972105.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 296aa    MW: 32765.7 Da    PI: 5.3055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.3e-08193239455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     a +++ r RR++i ++ +eL +l+P         K++ ae+ + A +YIk Lq
  XP_024972105.1 193 AQSMAARVRRRKISEKTQELGKLIPGgH------KMNTAEMFQAAFKYIKFLQ 239
                     567889*******************955......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MALGFYTNWS DHHDTAGYSS LFRPPSPELP PELFAFSESS TLYDNCINQL FDPNYSNNNL  60
DQFPTYSNVL PPITPADAAG HVFAPSPEFQ VSSFSYEDPY LNHLPYSTTF DHHQQQHLSH  120
FFMMEHPMGI AAALPPSQLP EIYQDGGGGA TLSSSWYDGG RGYSKDKVEE SSRVQVTGKQ  180
NAGGGGGMIR LSAQSMAARV RRRKISEKTQ ELGKLIPGGH KMNTAEMFQA AFKYIKFLQA  240
QVGVLKLMDS IPEDEQGMDN GELMEALVTS TSMQEKLYSA EKCIVSKHFA ETLAIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-25bHLH family protein