PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20834.5 Da PI: 10.7737 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.3 | 1.1e-07 | 138 | 164 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h+ +Er RR++iN+++ L++++P + XP_024972079.1 138 RHSLAERVRRKKINERMKLLQSIVPGC 164 599**********************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MAAFSHHHHL FLHQTTAFHP HSTTHNFSGH QPTTAFHPHS TTHNFSVHQP TTTAAAAACL 60 LDQDHHHRTK NLQRKGYSTS MEVDGGSHDH LAMKRKAING ISQDTRKGKR KKQKKSGDDE 120 GEIGYIHVRA RSGQATNRHS LAERVRRKKI NERMKLLQSI VPGCDQVIAS SYVDRIWFIL 180 SVFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 112 | KRKAINGISQDTRKGKRKK |
2 | 94 | 115 | KRKAINGISQDTRKGKRKKQKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26260.3 | 9e-20 | bHLH family protein |