PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972062.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 340aa MW: 38494.1 Da PI: 4.9998

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l +++++G g+W++I++ g++R++k+c++rw +yl XP_024972062.1 19 KGLWSPEEDEKLFTYITRFGVGSWSSIPHLAGLKRCGKSCRLRWVNYL 66 678*******************************************97 PP
2	Myb_DNA-binding	43.4	8e-14	72	116	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g ++++E++++v +++ lG++ W+ Ia +++ gRt++++k++w++ XP_024972062.1 72 KGGFSQQEQDIIVGLHQVLGNR-WAQIATKLP-GRTDNEIKNYWNSC 116 6789****************.*****.*********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MAANISCSAI NQKNLKIKKG LWSPEEDEKL FTYITRFGVG SWSSIPHLAG LKRCGKSCRL 60 RWVNYLRPDL KKGGFSQQEQ DIIVGLHQVL GNRWAQIATK LPGRTDNEIK NYWNSCLKKK 120 LIKQGVDPNT HKPITDVPNQ VNEDKTGFAC KQSENVQTSS SSSTSSMALM AAHELDQAFH 180 MNNNGGLITN NLFLGELEMG IAPIDLNCDL LAQYQQMNCE ISSSSFDLYD NLTSRMIMDS 240 FMKEEAREFS STNYCNSNMN NDRFEGFQMN TEPEEGNANQ WRELREIQAY NDVGDFDNGR 300 AGQLKKGQSD FVQNDAEDFS IYQMGFLSET LLGEYLDAFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	2e-68	MYB family protein