PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024972061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21317.1 Da PI: 9.059 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139 | 1.6e-43 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear+rdPvyG+vgvi+ lq q+++l+++l+ XP_024972061.1 10 PCAACKFLRRKCLSGCIFAPYFPPENPQKFINVHKVFGASNVTKLLNDVLPHQREDAVNSLAYEAEARVRDPVYGCVGVISFLQIQVDRLQKDLD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++k+ XP_024972061.1 105 AAKA 108 9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MASSSSYNSP CAACKFLRRK CLSGCIFAPY FPPENPQKFI NVHKVFGASN VTKLLNDVLP 60 HQREDAVNSL AYEAEARVRD PVYGCVGVIS FLQIQVDRLQ KDLDAAKADL IHCSRNTTIP 120 AAMSPHLSSI QPAISRQRAM DHNFHGRRFS SDGGGGFHQP PPPSYLYHNV NRPWNCHYPY 180 NSRGGGGAGG GGGNM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 2e-68 | LBD family protein |