PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972061.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 195aa    MW: 21317.1 Da    PI: 9.059
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601391.6e-4310108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear+rdPvyG+vgvi+ lq q+++l+++l+
  XP_024972061.1  10 PCAACKFLRRKCLSGCIFAPYFPPENPQKFINVHKVFGASNVTKLLNDVLPHQREDAVNSLAYEAEARVRDPVYGCVGVISFLQIQVDRLQKDLD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++k+
  XP_024972061.1 105 AAKA 108
                     9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MASSSSYNSP CAACKFLRRK CLSGCIFAPY FPPENPQKFI NVHKVFGASN VTKLLNDVLP  60
HQREDAVNSL AYEAEARVRD PVYGCVGVIS FLQIQVDRLQ KDLDAAKADL IHCSRNTTIP  120
AAMSPHLSSI QPAISRQRAM DHNFHGRRFS SDGGGGFHQP PPPSYLYHNV NRPWNCHYPY  180
NSRGGGGAGG GGGNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.22e-68LBD family protein